Merge pull request #171 from CDCgov/correct-bacteria-test-fasta

change the . to - in species ID, in multifasta and metadata
CDCgov · Feb 28, 2024 · b246352 · b246352
2 parents fcae1b1 + 419b6c3
commit b246352
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Showing 9 changed files with 3 additions and 96,342 deletions.
diff --git a/assets/metadata_template.xlsx b/assets/metadata_template.xlsx
diff --git a/assets/sample_fastas/Cdiphtheriae/BX248355.fasta b/assets/sample_fastas/Cdiphtheriae/BX248355.fasta
@@ -1,4 +1,4 @@
->BX248355.1-segment2 Corynebacterium diphtheriae gravis NCTC13129, complete genome; segment 2/8
+>BX248355-1-segment2 Corynebacterium diphtheriae gravis NCTC13129, complete genome; segment 2/8
 TTATATGAGCCCTTCCTTATCGAGTCATCTGCATCAGCGGCCTCGGTATCGGCCACCTGCGGTTCACTTG
 GTGGCAGATCCATCGTTACTGGCTCGCCACGAACACTCACTACTGTAGTAAGTAGGGGGCTAGGCCACAT
 AAGTGGGAAAGGGTGAGTTATATCATATGAAAATTGCCCGAAATAGGAGTAAAGAATTTTGCCTGCGATA
@@ -4072,7 +4072,7 @@ ACCTCACCTCACCTGCGAGAGGTGAGGTAGAAAACGTAACTGCGACCGATTACAGCGGGATGTTGCCGTG
 CTTCTTCGCAGGAACGTTAACAACCTTGCGGTCCAAGAGGCGTAGCGCTTCAATGATCTGACCACGGGTT
 TCGCTTGGTGGAATAACGGCGTCGACGTAACCACGCTCGGCTGCCATGTAAGGGTTGACCAAAGTTTCTT
 CGTACTCGCGCTCGTATTCCTTAGCTACAGCGAGCATGTCCTTGCCTTCGGCAGCAGCGGCCTTGATTTC
->BX248355.1-segment3 Corynebacterium diphtheriae gravis NCTC13129, complete genome; segment 3/8
+>BX248355-1-segment3 Corynebacterium diphtheriae gravis NCTC13129, complete genome; segment 3/8
 CTTGCGGTAGATGAATCCCACGGCACCAGCGGCGCCCATGACAGCGATCTGTGCGGTTGGCCATGCCAAG
 ACGAGGTCGGCGCCCATGTCCTTCGAACCCATCACGCAGTAAGCGCCACCGTAGGACTTGCGGGTAATCA
 CAGTGATCTTGCCGACGGTTGCTTCAGAGTAGGCGTAGAGGAGCTTGGCGCCACGGCGAATGATTCCGTC
@@ -4442,7 +4442,7 @@ CGATTATTGGGCATGGTGCTCGTATTGGAGCCAATGCTCGCATTACCGGCTGTGTGATTGGTGAAGGCGC
 GGAAATCGGTGCACGTTGTGAGCTTCGCGACGGCATGCGTGTGTGGCCAGGAGTTGTGATTCCAACTGCT
 GGTATCCGTTTTAGTTCGGATGCCTAAGTTGCAGTAATACCTAGTGCAACCTAGTCATAGGCTCCCACCA
 CGGCAGGGTAGACCCCCTCGTTGTGGTGGGAGCTTTCGCATTTTATGGAGGCTGGCTGAAGCGATTTCTT
->BX248355.1-segment4 Corynebacterium diphtheriae gravis NCTC13129, complete genome; segment 4/8
+>BX248355-1-segment4 Corynebacterium diphtheriae gravis NCTC13129, complete genome; segment 4/8
 AGTAGCTGCTGAGTGCTAGCACGTTTGTGTTCAAACACTTTTATGCGACACGCCGATAATGAGCCGACTA
 GCGAAGTATTTTTAGAGGCACCACTATATGTAGTACCCCCACCGTATACCCCTATGGTGGTGGCAATGTT
 ACTGGTGTGACTAATGAAGTTAACAACCTGCGGAAATGCAATTTTTCCGATCGGAATTACATGTTCAGGT

diff --git a/assets/sample_fastas/bacteria/CP014051.fasta b/assets/sample_fastas/bacteria/CP014051.fasta
diff --git a/assets/sample_fastas/bacteria/CP040557.fasta b/assets/sample_fastas/bacteria/CP040557.fasta
diff --git a/assets/sample_fastqs/SRR27947460sub_1.fastq b/assets/sample_fastqs/SRR27947460sub_1.fastq
diff --git a/assets/sample_fastqs/SRR27947460sub_2.fastq b/assets/sample_fastqs/SRR27947460sub_2.fastq
diff --git a/assets/sample_metadata/Cdiphtheriae_test_1.xlsx b/assets/sample_metadata/Cdiphtheriae_test_1.xlsx
diff --git a/assets/sample_metadata/metadata_template.xlsx b/assets/sample_metadata/metadata_template.xlsx
diff --git a/assets/sample_metadata/~$MPXV_metadata_Sample_Run_1.xlsx b/assets/sample_metadata/~$MPXV_metadata_Sample_Run_1.xlsx