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Removed shared_lib flag when running the model #5

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Merged
AlfredMayhew merged 1 commit into from
Oct 22, 2025
Merged

Removed shared_lib flag when running the model #5

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8 changes: 4 additions & 4 deletions AtChemTools/build_and_run.py
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Original file line number Diff line number Diff line change
Expand Up @@ -197,7 +197,7 @@ def run_model(atchem2_path : str, model_path : str = ""):
script_dir = os.getcwd()
os.chdir(atchem2_path)
if model_path:
os.system(f"{atchem2_path}/atchem2 --model={model_path} --shared_lib={model_path}/configuration/mechanism.so")
os.system(f"{atchem2_path}/atchem2 --model={model_path}")
else:
os.system(f"{atchem2_path}/atchem2")
os.chdir(script_dir)
Expand All @@ -208,8 +208,8 @@ def find_unique_dirname(atchem2_path : str):
a new simulation, and give a meaningful model subdirectory name for the
user, if needed."""

fmt_dtime = str(datetime.now()).replace(" ", "_")
fmt_dtime = str(datetime.now()).replace(" ", "_").replace(":", "-")

return f"model_{fmt_dtime}"

def _write_build_run_injections(injection_df : pd.DataFrame, atchem2_path : str,
Expand Down Expand Up @@ -598,7 +598,7 @@ def write_build_run(atchem2_path : str, mech_path : str, day : int, month : int,
#copy the mechanism to the AtChem directory
new_mech_path = f"{new_model_path}/{mech_path.split('/')[-1]}"
os.system(f"cp {mech_path} {new_mech_path}")

#write config files using data passed
write_config(new_model_path, initial_concs=initial_concs,
spec_constrain=spec_constrain, spec_constant=spec_constant,
Expand Down