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@AstraZeneca-NGS

AstraZeneca - NGS Team

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  1. VarDict VarDict Public

    VarDict

    Perl 191 62

  2. VarDictJava VarDictJava Public

    VarDict Java port

    Java 131 55

  3. disambiguate disambiguate Public archive

    Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem

    C++ 29 15

  4. simple_sv_annotation simple_sv_annotation Public archive

    Simplify snpEff annotations for interesting cases

    Python 21 4

  5. Seq2C Seq2C Public

    Perl 4 5

Repositories

Showing 10 of 15 repositories
  • cbioportal Public archive Forked from cBioPortal/cbioportal
    AstraZeneca-NGS/cbioportal’s past year of commit activity
    Java 1 AGPL-3.0 566 0 0 Updated Aug 5, 2024
  • Seq2C Public
    AstraZeneca-NGS/Seq2C’s past year of commit activity
    Perl 4 MIT 5 2 0 Updated Jan 11, 2024
  • VarDict Public

    VarDict

    AstraZeneca-NGS/VarDict’s past year of commit activity
    Perl 191 MIT 62 38 1 Updated Jan 5, 2024
  • VarDictJava Public

    VarDict Java port

    AstraZeneca-NGS/VarDictJava’s past year of commit activity
    Java 131 MIT 55 63 3 Updated Jan 5, 2024
  • rnaseq-nf Public archive Forked from nextflow-io/rnaseq-nf
    AstraZeneca-NGS/rnaseq-nf’s past year of commit activity
    Nextflow 0 MPL-2.0 104 0 0 Updated Dec 3, 2023
  • ichorCNA Public archive Forked from GavinHaLab/ichorCNA

    Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.

    AstraZeneca-NGS/ichorCNA’s past year of commit activity
    R 0 GPL-3.0 90 0 0 Updated Aug 30, 2023
  • MultiQC Public archive Forked from MultiQC/MultiQC

    Aggregate results from bioinformatics analyses across many samples into a single report.

    AstraZeneca-NGS/MultiQC’s past year of commit activity
    Python 3 GPL-3.0 611 0 0 Updated Jul 6, 2023
  • TargQC Public Forked from vladsavelyev/TargQC

    Alignment coverage analysis tool

    AstraZeneca-NGS/TargQC’s past year of commit activity
    HTML 0 GPL-3.0 1 0 0 Updated Sep 11, 2019
  • simple_sv_annotation Public archive

    Simplify snpEff annotations for interesting cases

    AstraZeneca-NGS/simple_sv_annotation’s past year of commit activity
    Python 21 4 1 0 Updated Feb 18, 2019
  • NGS_Utils Public archive Forked from vladsavelyev/NGS_Utils

    Utility functions for bioinformatics projects

    AstraZeneca-NGS/NGS_Utils’s past year of commit activity
    JavaScript 0 3 0 0 Updated May 21, 2018
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