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    15 repositories

    • cbioportal

      Public archive
      Java
      •
      GNU Affero General Public License v3.0
      •560•1•0•0•Updated Aug 5, 2024Aug 5, 2024

    • Seq2C

      Public
      Perl
      •
      MIT License
      •5•4•2•0•Updated Jan 11, 2024Jan 11, 2024

    • VarDict

      Public
      VarDict
      Perl
      •
      MIT License
      •62•191•38•1•Updated Jan 5, 2024Jan 5, 2024

    • VarDictJava

      Public
      VarDict Java port
      Java
      •
      MIT License
      •55•131•63•3•Updated Jan 5, 2024Jan 5, 2024

    • rnaseq-nf

      Public archive
      Nextflow
      •
      Mozilla Public License 2.0
      •104•0•0•0•Updated Dec 3, 2023Dec 3, 2023

    • ichorCNA

      Public archive
      Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.
      R
      •
      GNU General Public License v3.0
      •89•0•0•0•Updated Aug 30, 2023Aug 30, 2023

    • MultiQC

      Public archive
      Aggregate results from bioinformatics analyses across many samples into a single report.
      Python
      •
      GNU General Public License v3.0
      •607•3•0•0•Updated Jul 6, 2023Jul 6, 2023

    • TargQC

      Public
      Alignment coverage analysis tool
      failed-migrating-to-azu-oncology-rd
      HTML
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Sep 11, 2019Sep 11, 2019

    • simple_sv_annotation

      Public archive
      Simplify snpEff annotations for interesting cases
      migrated-to-azu-oncology-rd
      Python
      •
      Other
      •4•21•1•0•Updated Feb 18, 2019Feb 18, 2019

    • NGS_Utils

      Public archive
      Utility functions for bioinformatics projects
      migrated-to-azu-oncology-rd
      JavaScript
      •3•0•0•0•Updated May 21, 2018May 21, 2018

    • disambiguate

      Public archive
      Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem
      migrated-to-azu-oncology-rd
      C++
      •
      MIT License
      •15•29•7•0•Updated May 8, 2018May 8, 2018

    • MultiQC_Clarity

      Public archive
      MultiQC plugin interacting with the Illumina Genologics Clarity LIMS
      migrated-to-azu-oncology-rd
      Python
      •
      MIT License
      •5•0•0•0•Updated Jan 23, 2018Jan 23, 2018

    • reference_data

      Public
      Reference data: BED files, genes, transcripts, variations.
      Python
      •29•82•4•0•Updated Nov 28, 2017Nov 28, 2017

    • exac_browser

      Public archive
      Browser for ExAC consortium data
      migrated-to-azu-oncology-rd
      JavaScript
      •
      MIT License
      •55•0•0•0•Updated Jun 21, 2017Jun 21, 2017

    • sambamba

      Public archive
      Tools for working with SAM/BAM data
      migrated-to-azu-oncology-rd
      D
      •
      GNU General Public License v2.0
      •107•0•0•0•Updated Oct 27, 2016Oct 27, 2016