Update R-CMD-check.yaml #19
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: R-CMD-check | |
| on: [push, pull_request] | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v2 | |
| - name: Set up R | |
| uses: r-lib/actions/setup-r@v2 | |
| - name: Install system dependencies | |
| run: | | |
| sudo apt-get install -y libmagick++-dev | |
| - name: Install R package dependencies with retries | |
| run: | | |
| RETRY_COUNT=5 | |
| RETRY_DELAY=10 | |
| for i in $(seq 1 $RETRY_COUNT); do | |
| Rscript -e 'install.packages("devtools")' && break || sleep $RETRY_DELAY | |
| done | |
| for i in $(seq 1 $RETRY_COUNT); do | |
| Rscript -e 'install.packages("remotes")' && break || sleep $RETRY_DELAY | |
| done | |
| for i in $(seq 1 $RETRY_COUNT); do | |
| Rscript -e 'remotes::install_deps(dependencies = TRUE)' && break || sleep $RETRY_DELAY | |
| done | |
| shell: bash | |
| - name: Install DropletQC from GitHub with retries | |
| run: | | |
| RETRY_COUNT=5 | |
| RETRY_DELAY=10 | |
| for i in $(seq 1 $RETRY_COUNT); do | |
| Rscript -e 'devtools::install_github("powellgenomicslab/DropletQC")' && break || sleep $RETRY_DELAY | |
| done | |
| shell: bash | |
| - name: Check package | |
| run: | | |
| R CMD check --no-manual --as-cran | |
| shell: Rscript {0} |