Update R-CMD-check.yaml

.github/workflows/R-CMD-check.yaml

@@ -17,27 +17,29 @@ jobs:
       run: |
         sudo apt-get install -y libmagick++-dev
 
-    - name: Check internet connection
+    - name: Install R package dependencies with retries
       run: |
-        ping -c 3 cran.r-project.org
-
-    - name: Install R package dependencies
-      run: |
-        install.packages('devtools')
-        install.packages('remotes')
-        remotes::install_deps(dependencies = TRUE)
-      shell: Rscript {0}
-
-    - name: Retry installing devtools if failed
-      if: failure()
+        RETRY_COUNT=5
+        RETRY_DELAY=10
+        for i in $(seq 1 $RETRY_COUNT); do
+          Rscript -e 'install.packages("devtools")' && break || sleep $RETRY_DELAY
+        done
+        for i in $(seq 1 $RETRY_COUNT); do
+          Rscript -e 'install.packages("remotes")' && break || sleep $RETRY_DELAY
+        done
+        for i in $(seq 1 $RETRY_COUNT); do
+          Rscript -e 'remotes::install_deps(dependencies = TRUE)' && break || sleep $RETRY_DELAY
+        done
+      shell: bash
+
+    - name: Install DropletQC from GitHub with retries
       run: |
-        install.packages('devtools')
-      shell: Rscript {0}
-
-    - name: Install DropletQC from GitHub
-      run: |
-        devtools::install_github("powellgenomicslab/DropletQC")
-      shell: Rscript {0}
+        RETRY_COUNT=5
+        RETRY_DELAY=10
+        for i in $(seq 1 $RETRY_COUNT); do
+          Rscript -e 'devtools::install_github("powellgenomicslab/DropletQC")' && break || sleep $RETRY_DELAY
+        done
+      shell: bash
 
     - name: Check package
       run: |