Commits

Breadcrumbs

History for

ondevelop

User selector

All users

Datepicker

All time

Commit History

Commits on Jul 26, 2017

• Fix bug in mkdir_p which caused

  Show description for 69e2785
  pd3

  committed
  69e2785

  Copy full SHA for 69e2785

Commits on Jul 6, 2017

• New sort command

  pd3

  committed
  8fe6acd

  Copy full SHA for 8fe6acd

Commits on Jul 25, 2016

• Fix typo

  Show description for deee047
  jmarshall

  committed
  deee047

  Copy full SHA for deee047

Commits on Jan 21, 2016

• add --no-version option to suppress appending of version and command line to output headers

  mcshane

  committed
  9cf0d82

  Copy full SHA for 9cf0d82

Commits on Dec 10, 2015

• add --threads option for output compression threads

  Show description for 6737c5c
  

  mcshane

  authored and

  jmarshall

  committed
  6737c5c

  Copy full SHA for 6737c5c

Commits on Jul 28, 2015

• Moved hts_bcf_wmode to be accesible by plugins

  

  pd3

  authored and

  mcshane

  committed
  33464ef

  Copy full SHA for 33464ef

• New isec -n~BITMASK option

  

  pd3

  authored and

  mcshane

  committed
  264745e

  Copy full SHA for 264745e

Commits on Jan 20, 2015

• isec: Write matching records for both VCFs in Venn mode

  pd3

  committed
  dbd6536

  Copy full SHA for dbd6536

Commits on Oct 20, 2014

• use new htslib file type detection and error reporting API

  pd3

  committed
  611c7e3

  Copy full SHA for 611c7e3

Commits on Oct 1, 2014

• isec supports -i/-e filtering

  pd3

  committed
  802367c

  Copy full SHA for 802367c

Commits on Aug 14, 2014

• Canonicalise whitespace -- USE -b/-w TO DIFF/BLAME ACROSS THIS COMMIT

  Show description for 1ffc547
  jmarshall

  committed
  1ffc547

  Copy full SHA for 1ffc547

Commits on Aug 13, 2014

• Reformat license text

  Show description for 3fd97a4
  jmarshall

  committed
  3fd97a4

  Copy full SHA for 3fd97a4

Commits on Aug 11, 2014

• Update copyright years to reflect when changes were made

  Show description for 3243ba8
  jmarshall

  committed
  3243ba8

  Copy full SHA for 3243ba8

Commits on Jun 24, 2014

• Add -o FILE / --output FILE option to redirect output

  jmarshall

  committed
  75d1b93

  Copy full SHA for 75d1b93

Commits on Jun 16, 2014

• isec: Allow -w with Venn-like subsets

  pd3

  committed
  1c56f5b

  Copy full SHA for 1c56f5b

• isec: Capture -p,-w usage mistakes

  pd3

  committed
  5744c0c

  Copy full SHA for 5744c0c

Commits on May 28, 2014

• htscmd => bcftools in log output

  mcshane

  committed
  aac2ffa

  Copy full SHA for aac2ffa

Commits on Apr 17, 2014

• isec: Do not attempt to output non-existent lines

  Show description for 94877a1
  pd3

  committed
  94877a1

  Copy full SHA for 94877a1

Commits on Apr 15, 2014

• isec: --complement does not accept a parameter

  pd3

  committed
  02a1fb3

  Copy full SHA for 02a1fb3

Commits on Apr 1, 2014

• Added copyright notice

  pd3

  committed
  02d82ba

  Copy full SHA for 02d82ba

• Added -S,-R,-T options

  pd3

  committed
  84a7ae5

  Copy full SHA for 84a7ae5

Commits on Mar 7, 2014

• isec: Free small forgotten chunk of memory on exit

  pd3

  committed
  6d16e91

  Copy full SHA for 6d16e91

Commits on Mar 6, 2014

• isec: Sanity check nonsense combination of -C,-w options

  pd3

  committed
  17d49cf

  Copy full SHA for 17d49cf

• isec: Reverting commit 8c0d05a

  pd3

  committed
  87d42eb

  Copy full SHA for 87d42eb

• isec: With -C output VCF, no need for -w

  pd3

  committed
  8c0d05a

  Copy full SHA for 8c0d05a

Commits on Feb 21, 2014

• usage displays for .vcf.gz only

  Show description for b9793a7
  mcshane

  committed
  b9793a7

  Copy full SHA for b9793a7

• consistency and cosmetic updates to help messages

  Show description for 5933bf3
  mcshane

  committed
  5933bf3

  Copy full SHA for 5933bf3

Commits on Feb 19, 2014

• isec: Notify user about frequently forgotten -w

  pd3

  committed
  83620ab

  Copy full SHA for 83620ab

Commits on Feb 11, 2014

• Minor usage help text change

  pd3

  committed
  7265ea1

  Copy full SHA for 7265ea1

Commits on Dec 11, 2013

• Updated to compile with modified bcf_hdr_fmt_text()

  pd3

  committed
  89bd0bc

  Copy full SHA for 89bd0bc

Commits on Nov 28, 2013

• Made options consistent across all bcftools; Renamed -o to -O.

  pd3

  committed
  876c52d

  Copy full SHA for 876c52d

Commits on Nov 26, 2013

• Updated descriptions and man page; Replaced -c/-m "any" with "all"

  pd3

  committed
  5890cca

  Copy full SHA for 5890cca

Commits on Nov 5, 2013

• Updated usage strings to correspond to actual commands

  pd3

  committed
  4e73f2a

  Copy full SHA for 4e73f2a

Commits on Oct 28, 2013

• Update for htslib API change: hts_open() has only two parameters

  jmarshall

  committed
  a09f3ae

  Copy full SHA for a09f3ae

Commits on Oct 10, 2013

• mpileup: An update to reflect changes in htslib vcf module

  pd3

  committed
  22c93ed

  Copy full SHA for 22c93ed

Pagination

Previous

Next