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Minor usage help text change
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pd3 committed Feb 11, 2014
1 parent 5833f13 commit 7265ea1
Showing 1 changed file with 3 additions and 2 deletions.
5 changes: 3 additions & 2 deletions vcfisec.c
Original file line number Diff line number Diff line change
Expand Up @@ -297,10 +297,11 @@ static void destroy_data(args_t *args)

static void usage(void)
{
fprintf(stderr, "About: Create intersections, unions and complements of VCF files\n");
fprintf(stderr, "About: Create intersections, unions and complements of VCF files.\n");
fprintf(stderr, " \n");
fprintf(stderr, "Usage: bcftools isec [options] <A.vcf.gz> <B.vcf.gz> ...\n");
fprintf(stderr, "Options:\n");
fprintf(stderr, " -c, --collapse <string> treat as identical sites with differing alleles for <snps|indels|both|all|some|none> [none]\n");
fprintf(stderr, " -c, --collapse <string> treat as identical records with <snps|indels|both|all|some|none>, see man page for details [none]\n");
fprintf(stderr, " -C, --complement output positions present only in the first file but missing in the others\n");
fprintf(stderr, " -f, --apply-filters <list> require at least one of the listed FILTER strings (e.g. \"PASS,.\")\n");
fprintf(stderr, " -n, --nfiles [+-=]<int> output positions present in this many (=), this many or more (+), or this many or fewer (-) files\n");
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