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Scientific Research Center of Jalisco, CIATEJ
- Camino Arenero 1227, El Bajío, 45019 Zapopan, Jal.
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genome-mining Public
Forked from carpentries-incubator/genome-miningGenome Mining in Prokaryotes
Python Other UpdatedAug 21, 2024 -
GALA Public
Forked from ganlab/GALALong-reads Gap-free Chromosome-scale Assembler
Python MIT License UpdatedMar 21, 2023 -
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plotsr Public
Forked from schneebergerlab/plotsrTool to plot synteny and structural rearrangements between genomes
Python MIT License UpdatedJan 27, 2022 -
freebayes Public
Forked from freebayes/freebayesBayesian haplotype-based genetic polymorphism discovery and genotyping.
C++ MIT License UpdatedJan 22, 2022 -
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lotus2 Public
Forked from hildebra/lotus2Amplicon sequencing pipelines suitable for 16S, 18S and ITS.
C++ GNU General Public License v3.0 UpdatedSep 1, 2021 -
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NextDenovo Public
Forked from Nextomics/NextDenovoFast and accurate de novo assembler for long reads
GNU General Public License v3.0 UpdatedAug 9, 2021 -
TBtools Public
Forked from CJ-Chen/TBtools-IIGUI/CommandLine Tool Box for biologistists to utilize NGS data.
Shell UpdatedApr 14, 2021 -
ARMOR Public
Forked from csoneson/ARMORLight-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data
R MIT License UpdatedMar 15, 2021 -
hal Public
Forked from ComparativeGenomicsToolkit/halHierarchical Alignment Format
C++ Other UpdatedMar 11, 2021 -
MMseqs2 Public
Forked from soedinglab/MMseqs2MMseqs2: ultra fast and sensitive search and clustering suite
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Toolkit for processing sequences in FASTA/Q formats
C MIT License UpdatedFeb 23, 2021 -
Liftoff Public
Forked from agshumate/LiftoffAn accurate GFF3/GTF lift over pipeline
Python GNU General Public License v3.0 UpdatedFeb 12, 2021 -
gggenomes Public
Forked from thackl/gggenomesA grammar of graphics for comparative genomics
R MIT License UpdatedFeb 11, 2021 -
megalodon Public
Forked from nanoporetech/megalodonMegalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by anchoring the information rich basecalling neural network out…
Python Other UpdatedFeb 5, 2021 -
shi7 Public
Forked from knights-lab/shi7Auto-parameterizing QC Pipeline for Illumina sequencing runs
Python GNU Affero General Public License v3.0 UpdatedDec 31, 2020 -
RagTag Public
Forked from malonge/RagTagFast reference-guided genome assembly scaffolding
Python MIT License UpdatedNov 27, 2020 -
RaGOO Public
Forked from malonge/RaGOOFast Reference-Guided Scaffolding of Genome Assembly Contigs. RagTag, the successor to RaGOO, is now available here: https://github.com/malonge/RagTag
Python MIT License UpdatedNov 20, 2020 -
scripting_linux_shell Public
Forked from eead-csic-compbio/scripting_linux_shellA collection of recipes to start scripting in the linux command line
Perl GNU General Public License v3.0 UpdatedOct 21, 2020 -
CheckM Public
Forked from Ecogenomics/CheckMAssess the quality of microbial genomes recovered from isolates, single cells, and metagenomes
Python GNU General Public License v3.0 UpdatedAug 10, 2020 -
make_SILVA_db Public
Forked from mikerobeson/make_SILVA_dbGeneral procedure for making QIIME 2 compatible SILVA reference files
Python BSD 3-Clause "New" or "Revised" License UpdatedJun 13, 2020 -
medaka Public
Forked from nanoporetech/medakaSequence correction provided by ONT Research
Python Other UpdatedMay 6, 2020