Scripting with the Linux shell

This material is maintained by Carlos P Cantalapiedra and Bruno Contreras Moreira

Summary

This is a five-session course for learning the basics of the Linux shell and scripting for data sciences such as genomics and breeding.

Contents

session	title	required time	URL
0	Setup	prior to course	session 0
1	Linux basics and files	2h	session 1
2	Processes and scripts	2h	session 2
3	Parsing with regular expressions	2h	session 3
4	Perl one-liners	2h	session 4
5	Advanced scripts	2h	session 5

We post regularly about these and related bioinformatics topics at the #!/perl/bioinfo blog, mostly in Spanish.