Release 0.11.29 - #1793
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Setuptools [recently changed (>=v62.1.0)](pypa/setuptools@1c23f5e) the name of the temporary build directory and lcov fails trying to access a non-existent directory (`geninfo: ERROR: cannot read /home/runner/work/AMICI/AMICI/python/sdist/build/temp.linux-x86_64-3.8/amici/src!`). This fixes that.
…Etab parameter mapping (#1783) * Fix logging error if no measurements in PEtab problem * Fix type handling in PEtab parameter mapping (support supplying simulation conditions as a dictionary) Co-authored-by: Daniel Weindl <dweindl@users.noreply.github.com>
Show more informative warnings when encountering `NaN` or `inf` in model quantities (include IDs where available and provide 2D indices instead of flat indices). Closes #1375
PEtab does currently not allow observables in noiseFormula and AMICI cannot handle states in sigma expressions. Therefore, where possible, replace species occurring in the error model definition by observableIds. See also #1788
* initial implementation, fixes #1760 * fixup * fixup * fixup * fix doc * fix doc * fixup swig * fixup sbml import * add sensitivity check, fixup time-independent triggers * fixup * fixup * fixup * fixup parameter event assignments * update test stats * Apply suggestions from code review Co-authored-by: Daniel Weindl <dweindl@users.noreply.github.com> Co-authored-by: Daniel Weindl <dweindl@users.noreply.github.com>
Codecov Report
@@ Coverage Diff @@
## master #1793 +/- ##
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- Coverage 78.05% 73.00% -5.06%
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Files 74 71 -3
Lines 12161 12256 +95
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- Hits 9492 8947 -545
- Misses 2669 3309 +640
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FFroehlich
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May 6, 2022
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