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Bioconductor failure and risk of deprecation

Status: Open.

#41 In zijianni/SpotClean;

· lshep opened on Feb 3, 2026

spatial image doesn't appear

Status: Open.

#40 In zijianni/SpotClean;

· lindaboshans opened on Oct 7, 2025

Error in if (abs(cor(slide$imagecol, slide$col)) > 0.99) {: missing value where TRUE/FALSE needed

Status: Open.

#38 In zijianni/SpotClean;

· forrwill opened on May 9, 2025

Adjusting the spot size in visualizeHeatmap

Status: Open.

#37 In zijianni/SpotClean;

· Icenin opened on Mar 20, 2025

Background and diffusion

Status: Open.

#36 In zijianni/SpotClean;

· Zockimonster opened on Dec 25, 2024

Recommendations

Status: Open.

#35 In zijianni/SpotClean;

· JoyOtten opened on Oct 5, 2024

GiottoSuite compatibility

Status: Open.

#34 In zijianni/SpotClean;

· MustafaElshani opened on Oct 4, 2024

RCTD "SpatialRNA: counts does not contain integers"

Status: Open.

#33 In zijianni/SpotClean;

· ahwanpandey opened on Sep 23, 2024

Compatibility with Visium HD data?

Status: Open.

#32 In zijianni/SpotClean;

· nicholashowell opened on Sep 18, 2024

Request: git-tag your versions

Status: Open.

#31 In zijianni/SpotClean;

· aowenson-imm opened on Aug 6, 2024

Applied for Stereoseq or not

Status: Open.

#30 In zijianni/SpotClean;

· oyxf opened on Jul 30, 2024

Spotclean() stalls on testdata

Status: Open.

#29 In zijianni/SpotClean;

· KarolineHoller opened on Mar 14, 2024