Code used for generating TAD and chroamtin loops, and coolpup to plot the enrichment of genomic interactions based on Hi-C files: 211018_Hi-C.sh
Use package GENOVA to plot the genomic interactions: 211101_GENOVA.r
Mapping of ChIP-seq sequencing files: 0.mapping_ChIP-seq.py
Calculating Repeats enrichment: RepeatsEnrichment_python3.py
Code used for the counting of reads of RNA-seq samples: 0.HTSeq.py
Code used for the generating bigwig files: bigwig(1).py
Plot the QC of sequencing files: plot.QC.r
Code used for downloading GEO files: run.d(1).py