run_Jupyter_notebook.sh: By default time the execution of the Jupyter…

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zachetienne · Sep 24, 2019 · 7af7438 · 7af7438
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diff --git a/BSSN/Psi4Cartesianvalidation/Tutorial-Psi4-Cartesian_validation.ipynb b/BSSN/Psi4Cartesianvalidation/Tutorial-Psi4-Cartesian_validation.ipynb
@@ -4,6 +4,15 @@
    "cell_type": "markdown",
    "metadata": {},
    "source": [
+    "<script async src=\"https://www.googletagmanager.com/gtag/js?id=UA-59152712-8\"></script>\n",
+    "<script>\n",
+    "  window.dataLayer = window.dataLayer || [];\n",
+    "  function gtag(){dataLayer.push(arguments);}\n",
+    "  gtag('js', new Date());\n",
+    "\n",
+    "  gtag('config', 'UA-59152712-8');\n",
+    "</script>\n",
+    "\n",
     "# Start-to-Finish validation of $\\psi_4$ in curvilinear coordinates against Cartesian formulation provided by [Patrick Nelson's Weyl scalars & invariants in Cartesian coordinates module](../../Tutorial-WeylScalarsInvariants-Cartesian.ipynb)\n",
     "\n",
     "### Author: Zach Etienne\n",

diff --git a/IllinoisGRMHD/doc/Tutorial-IllinoisGRMHD__Overview.ipynb b/IllinoisGRMHD/doc/Tutorial-IllinoisGRMHD__Overview.ipynb
@@ -4,6 +4,15 @@
    "cell_type": "markdown",
    "metadata": {},
    "source": [
+    "<script async src=\"https://www.googletagmanager.com/gtag/js?id=UA-59152712-8\"></script>\n",
+    "<script>\n",
+    "  window.dataLayer = window.dataLayer || [];\n",
+    "  function gtag(){dataLayer.push(arguments);}\n",
+    "  gtag('js', new Date());\n",
+    "\n",
+    "  gtag('config', 'UA-59152712-8');\n",
+    "</script>\n",
+    "\n",
     "# IllinoisGRMHD: Basic equations and modules\n",
     "\n",
     "## Authors: Zach Etienne & Leo Werneck\n",

diff --git a/...IllinoisGRMHD__apply_tau_floor__enforce_limits_on_primitives_and_recompute_conservs.ipynb b/...IllinoisGRMHD__apply_tau_floor__enforce_limits_on_primitives_and_recompute_conservs.ipynb
@@ -4,6 +4,15 @@
    "cell_type": "markdown",
    "metadata": {},
    "source": [
+    "<script async src=\"https://www.googletagmanager.com/gtag/js?id=UA-59152712-8\"></script>\n",
+    "<script>\n",
+    "  window.dataLayer = window.dataLayer || [];\n",
+    "  function gtag(){dataLayer.push(arguments);}\n",
+    "  gtag('js', new Date());\n",
+    "\n",
+    "  gtag('config', 'UA-59152712-8');\n",
+    "</script>\n",
+    "\n",
     "# Tutorial-IllinoisGRMHD: apply_tau_floor__enforce_limits_on_primitives_and_recompute_conservs.C\n",
     "\n",
     "## Authors: Zach Etienne & Leo Werneck\n",

diff --git a/IllinoisGRMHD/doc/Tutorial-IllinoisGRMHD__driver_evaluate_MHD_rhs.ipynb b/IllinoisGRMHD/doc/Tutorial-IllinoisGRMHD__driver_evaluate_MHD_rhs.ipynb
@@ -4,6 +4,15 @@
    "cell_type": "markdown",
    "metadata": {},
    "source": [
+    "<script async src=\"https://www.googletagmanager.com/gtag/js?id=UA-59152712-8\"></script>\n",
+    "<script>\n",
+    "  window.dataLayer = window.dataLayer || [];\n",
+    "  function gtag(){dataLayer.push(arguments);}\n",
+    "  gtag('js', new Date());\n",
+    "\n",
+    "  gtag('config', 'UA-59152712-8');\n",
+    "</script>\n",
+    "\n",
     "# Tutorial-IllinoisGRMHD: `driver_evaluate_MHD_rhs.C`\n",
     "\n",
     "## Authors: Zach Etienne & Leo Werneck\n",

diff --git a/IllinoisGRMHD/doc/Tutorial-IllinoisGRMHD__inlined_functions.ipynb b/IllinoisGRMHD/doc/Tutorial-IllinoisGRMHD__inlined_functions.ipynb
@@ -4,6 +4,15 @@
    "cell_type": "markdown",
    "metadata": {},
    "source": [
+    "<script async src=\"https://www.googletagmanager.com/gtag/js?id=UA-59152712-8\"></script>\n",
+    "<script>\n",
+    "  window.dataLayer = window.dataLayer || [];\n",
+    "  function gtag(){dataLayer.push(arguments);}\n",
+    "  gtag('js', new Date());\n",
+    "\n",
+    "  gtag('config', 'UA-59152712-8');\n",
+    "</script>\n",
+    "\n",
     "# Tutorial-IllinoisGRMHD: inlined_functions.C\n",
     "\n",
     "## Authors: Zach Etienne & Leo Werneck\n",

diff --git a/IllinoisGRMHD/doc/Tutorial-IllinoisGRMHD__mhdflux.ipynb b/IllinoisGRMHD/doc/Tutorial-IllinoisGRMHD__mhdflux.ipynb
@@ -4,6 +4,15 @@
    "cell_type": "markdown",
    "metadata": {},
    "source": [
+    "<script async src=\"https://www.googletagmanager.com/gtag/js?id=UA-59152712-8\"></script>\n",
+    "<script>\n",
+    "  window.dataLayer = window.dataLayer || [];\n",
+    "  function gtag(){dataLayer.push(arguments);}\n",
+    "  gtag('js', new Date());\n",
+    "\n",
+    "  gtag('config', 'UA-59152712-8');\n",
+    "</script>\n",
+    "\n",
     "# Tutorial-IllinoisGRMHD: mhdflux.C\n",
     "\n",
     "## Authors: Zach Etienne & Leo Werneck\n",

diff --git a/IllinoisGRMHD/doc/Tutorial-IllinoisGRMHD__reconstruct_set_of_prims_PPM.ipynb b/IllinoisGRMHD/doc/Tutorial-IllinoisGRMHD__reconstruct_set_of_prims_PPM.ipynb
@@ -4,6 +4,15 @@
    "cell_type": "markdown",
    "metadata": {},
    "source": [
+    "<script async src=\"https://www.googletagmanager.com/gtag/js?id=UA-59152712-8\"></script>\n",
+    "<script>\n",
+    "  window.dataLayer = window.dataLayer || [];\n",
+    "  function gtag(){dataLayer.push(arguments);}\n",
+    "  gtag('js', new Date());\n",
+    "\n",
+    "  gtag('config', 'UA-59152712-8');\n",
+    "</script>\n",
+    "\n",
     "# Tutorial-IllinoisGRMHD: reconstruct_set_of_prims_PPM.C\n",
     "\n",
     "## Authors: Zach Etienne & Leo Werneck\n",

diff --git a/IllinoisGRMHD/doc/Tutorial-IllinoisGRMHD__the_conservative_to_primitive_algorithm.ipynb b/IllinoisGRMHD/doc/Tutorial-IllinoisGRMHD__the_conservative_to_primitive_algorithm.ipynb
@@ -4,6 +4,15 @@
    "cell_type": "markdown",
    "metadata": {},
    "source": [
+    "<script async src=\"https://www.googletagmanager.com/gtag/js?id=UA-59152712-8\"></script>\n",
+    "<script>\n",
+    "  window.dataLayer = window.dataLayer || [];\n",
+    "  function gtag(){dataLayer.push(arguments);}\n",
+    "  gtag('js', new Date());\n",
+    "\n",
+    "  gtag('config', 'UA-59152712-8');\n",
+    "</script>\n",
+    "\n",
     "# Tutorial-IllinoisGRMHD: The conservative to primitive algorithm\n",
     "\n",
     "## Authors: Zach Etienne & Leo Werneck\n",

diff --git a/Tutorial-ADM_Initial_Data-Brill-Lindquist.ipynb b/Tutorial-ADM_Initial_Data-Brill-Lindquist.ipynb
@@ -4,6 +4,15 @@
    "cell_type": "markdown",
    "metadata": {},
    "source": [
+    "<script async src=\"https://www.googletagmanager.com/gtag/js?id=UA-59152712-8\"></script>\n",
+    "<script>\n",
+    "  window.dataLayer = window.dataLayer || [];\n",
+    "  function gtag(){dataLayer.push(arguments);}\n",
+    "  gtag('js', new Date());\n",
+    "\n",
+    "  gtag('config', 'UA-59152712-8');\n",
+    "</script>\n",
+    "\n",
     "# [Brill-Lindquist](https://journals.aps.org/pr/abstract/10.1103/PhysRev.131.471) Initial data\n",
     "## Author: Zach Etienne\n",
     "###  Formatting improvements courtesy Brandon Clark\n",

diff --git a/...ial-ADM_Initial_Data-Converting_Exact_ADM_Spherical_or_Cartesian_to_BSSNCurvilinear.ipynb b/...ial-ADM_Initial_Data-Converting_Exact_ADM_Spherical_or_Cartesian_to_BSSNCurvilinear.ipynb
@@ -4,6 +4,15 @@
    "cell_type": "markdown",
    "metadata": {},
    "source": [
+    "<script async src=\"https://www.googletagmanager.com/gtag/js?id=UA-59152712-8\"></script>\n",
+    "<script>\n",
+    "  window.dataLayer = window.dataLayer || [];\n",
+    "  function gtag(){dataLayer.push(arguments);}\n",
+    "  gtag('js', new Date());\n",
+    "\n",
+    "  gtag('config', 'UA-59152712-8');\n",
+    "</script>\n",
+    "\n",
     "# Converting *Exact* ADM Initial Data in the Spherical or Cartesian Basis to BSSN Initial Data in the Desired Curvilinear Basis\n",
     "## Author: Zach Etienne\n",
     "### Formatting improvements courtesy Brandon Clark\n",

diff --git a/...ADM_Initial_Data-Converting_Numerical_ADM_Spherical_or_Cartesian_to_BSSNCurvilinear.ipynb b/...ADM_Initial_Data-Converting_Numerical_ADM_Spherical_or_Cartesian_to_BSSNCurvilinear.ipynb
@@ -4,6 +4,15 @@
    "cell_type": "markdown",
    "metadata": {},
    "source": [
+    "<script async src=\"https://www.googletagmanager.com/gtag/js?id=UA-59152712-8\"></script>\n",
+    "<script>\n",
+    "  window.dataLayer = window.dataLayer || [];\n",
+    "  function gtag(){dataLayer.push(arguments);}\n",
+    "  gtag('js', new Date());\n",
+    "\n",
+    "  gtag('config', 'UA-59152712-8');\n",
+    "</script>\n",
+    "\n",
     "# Converting *Numerical* ADM Initial Data in the Spherical or Cartesian Basis to BSSN Initial Data in the Desired Curvilinear Basis\n",
     "## Author: Zach Etienne\n",
     "### Formatting improvements courtesy Brandon Clark\n",

diff --git a/Tutorial-ADM_Initial_Data-ShiftedKerrSchild.ipynb b/Tutorial-ADM_Initial_Data-ShiftedKerrSchild.ipynb
@@ -4,6 +4,15 @@
    "cell_type": "markdown",
    "metadata": {},
    "source": [
+    "<script async src=\"https://www.googletagmanager.com/gtag/js?id=UA-59152712-8\"></script>\n",
+    "<script>\n",
+    "  window.dataLayer = window.dataLayer || [];\n",
+    "  function gtag(){dataLayer.push(arguments);}\n",
+    "  gtag('js', new Date());\n",
+    "\n",
+    "  gtag('config', 'UA-59152712-8');\n",
+    "</script>\n",
+    "\n",
     "# [Shifted Kerr-Schild Solution](https://arxiv.org/pdf/1704.00599.pdf) Initial Data\n",
     "\n",
     "## Authors: George Vopal & Zach Etienne\n",

diff --git a/Tutorial-ADM_Initial_Data-StaticTrumpet.ipynb b/Tutorial-ADM_Initial_Data-StaticTrumpet.ipynb
@@ -4,6 +4,15 @@
    "cell_type": "markdown",
    "metadata": {},
    "source": [
+    "<script async src=\"https://www.googletagmanager.com/gtag/js?id=UA-59152712-8\"></script>\n",
+    "<script>\n",
+    "  window.dataLayer = window.dataLayer || [];\n",
+    "  function gtag(){dataLayer.push(arguments);}\n",
+    "  gtag('js', new Date());\n",
+    "\n",
+    "  gtag('config', 'UA-59152712-8');\n",
+    "</script>\n",
+    "\n",
     "# [Static Trumpet Black Hole](https://arxiv.org/abs/1403.5484) Initial data\n",
     "\n",
     "## Authors: Terrence Pierre Jacques, Zach Etienne & Ian Ruchlin\n",

diff --git a/Tutorial-ADM_Initial_Data-TOV.ipynb b/Tutorial-ADM_Initial_Data-TOV.ipynb
@@ -4,6 +4,15 @@
    "cell_type": "markdown",
    "metadata": {},
    "source": [
+    "<script async src=\"https://www.googletagmanager.com/gtag/js?id=UA-59152712-8\"></script>\n",
+    "<script>\n",
+    "  window.dataLayer = window.dataLayer || [];\n",
+    "  function gtag(){dataLayer.push(arguments);}\n",
+    "  gtag('js', new Date());\n",
+    "\n",
+    "  gtag('config', 'UA-59152712-8');\n",
+    "</script>\n",
+    "\n",
     "# [Polytropic TOV](https://en.wikipedia.org/wiki/Tolman%E2%80%93Oppenheimer%E2%80%93Volkoff_equation) Initial Data\n",
     "\n",
     "## Authors: Phil Chang & Zach Etienne\n",

diff --git a/Tutorial-ADM_Initial_Data-UIUC_BlackHole.ipynb b/Tutorial-ADM_Initial_Data-UIUC_BlackHole.ipynb
@@ -4,6 +4,15 @@
    "cell_type": "markdown",
    "metadata": {},
    "source": [
+    "<script async src=\"https://www.googletagmanager.com/gtag/js?id=UA-59152712-8\"></script>\n",
+    "<script>\n",
+    "  window.dataLayer = window.dataLayer || [];\n",
+    "  function gtag(){dataLayer.push(arguments);}\n",
+    "  gtag('js', new Date());\n",
+    "\n",
+    "  gtag('config', 'UA-59152712-8');\n",
+    "</script>\n",
+    "\n",
     "# [UIUC Black Hole](https://arxiv.org/abs/1001.4077) Initial data\n",
     "\n",
     "## Authors: Terrence Pierre Jacques, Zach Etienne, & Ian Ruchlin\n",

diff --git a/Tutorial-ADM_and_T4UUmunu_Initial_Data-TOV.ipynb b/Tutorial-ADM_and_T4UUmunu_Initial_Data-TOV.ipynb
@@ -4,6 +4,15 @@
    "cell_type": "markdown",
    "metadata": {},
    "source": [
+    "<script async src=\"https://www.googletagmanager.com/gtag/js?id=UA-59152712-8\"></script>\n",
+    "<script>\n",
+    "  window.dataLayer = window.dataLayer || [];\n",
+    "  function gtag(){dataLayer.push(arguments);}\n",
+    "  gtag('js', new Date());\n",
+    "\n",
+    "  gtag('config', 'UA-59152712-8');\n",
+    "</script>\n",
+    "\n",
     "# Setting up Polytropic [TOV](https://en.wikipedia.org/wiki/Tolman%E2%80%93Oppenheimer%E2%80%93Volkoff_equation) Initial Data\n",
     "\n",
     "## Authors: Phil Chang, Zachariah B. Etienne\n",

diff --git a/Tutorial-ADM_in_terms_of_BSSN.ipynb b/Tutorial-ADM_in_terms_of_BSSN.ipynb
@@ -4,6 +4,15 @@
    "cell_type": "markdown",
    "metadata": {},
    "source": [
+    "<script async src=\"https://www.googletagmanager.com/gtag/js?id=UA-59152712-8\"></script>\n",
+    "<script>\n",
+    "  window.dataLayer = window.dataLayer || [];\n",
+    "  function gtag(){dataLayer.push(arguments);}\n",
+    "  gtag('js', new Date());\n",
+    "\n",
+    "  gtag('config', 'UA-59152712-8');\n",
+    "</script>\n",
+    "\n",
     "# ADM Quantities in terms of BSSN Quantities\n",
     "\n",
     "## Author: Zach Etienne\n",

diff --git a/Tutorial-BSSN-Enforcing_Determinant_gammabar_equals_gammahat_Constraint.ipynb b/Tutorial-BSSN-Enforcing_Determinant_gammabar_equals_gammahat_Constraint.ipynb
@@ -4,6 +4,15 @@
    "cell_type": "markdown",
    "metadata": {},
    "source": [
+    "<script async src=\"https://www.googletagmanager.com/gtag/js?id=UA-59152712-8\"></script>\n",
+    "<script>\n",
+    "  window.dataLayer = window.dataLayer || [];\n",
+    "  function gtag(){dataLayer.push(arguments);}\n",
+    "  gtag('js', new Date());\n",
+    "\n",
+    "  gtag('config', 'UA-59152712-8');\n",
+    "</script>\n",
+    "\n",
     "# Enforce conformal 3-metric $\\det{\\bar{\\gamma}_{ij}}=\\det{\\hat{\\gamma}_{ij}}$ constraint (Eq. 53 of [Ruchlin, Etienne, and Baumgarte (2018)](https://arxiv.org/abs/1712.07658))\n",
     "\n",
     "## Author: Zach Etienne\n",

diff --git a/Tutorial-BSSNCurvilinear_Plus_Matter_Sources.ipynb b/Tutorial-BSSNCurvilinear_Plus_Matter_Sources.ipynb
@@ -4,6 +4,15 @@
    "cell_type": "markdown",
    "metadata": {},
    "source": [
+    "<script async src=\"https://www.googletagmanager.com/gtag/js?id=UA-59152712-8\"></script>\n",
+    "<script>\n",
+    "  window.dataLayer = window.dataLayer || [];\n",
+    "  function gtag(){dataLayer.push(arguments);}\n",
+    "  gtag('js', new Date());\n",
+    "\n",
+    "  gtag('config', 'UA-59152712-8');\n",
+    "</script>\n",
+    "\n",
     "# Adding the $8\\pi T^{\\mu\\nu}$ Matter Source Terms to Einstein's equations of general relativity in the [BSSN](http://www2.yukawa.kyoto-u.ac.jp/~yuichiro.sekiguchi/3+1.pdf) formalism, in ***curvilinear*** coordinates, using a covariant reference metric approach: C code generation of the evolution equations' right-hand sides\n",
     "\n",
     "## Python module containing these expressions: [BSSN/BSSN_RHS.py](../edit/BSSN/BSSN_RHSs.py)\n",

diff --git a/Tutorial-BSSN_constraints.ipynb b/Tutorial-BSSN_constraints.ipynb
@@ -4,6 +4,15 @@
    "cell_type": "markdown",
    "metadata": {},
    "source": [
+    "<script async src=\"https://www.googletagmanager.com/gtag/js?id=UA-59152712-8\"></script>\n",
+    "<script>\n",
+    "  window.dataLayer = window.dataLayer || [];\n",
+    "  function gtag(){dataLayer.push(arguments);}\n",
+    "  gtag('js', new Date());\n",
+    "\n",
+    "  gtag('config', 'UA-59152712-8');\n",
+    "</script>\n",
+    "\n",
     "# [BSSN](http://www2.yukawa.kyoto-u.ac.jp/~yuichiro.sekiguchi/3+1.pdf) Hamiltonian and momentum constraint equations, in ***curvilinear*** coordinates, using a covariant reference metric approach: C code generation\n",
     "\n",
     "## Authors: Ian Ruchlin & Zach Etienne\n",

diff --git a/Tutorial-BSSN_formulation.ipynb b/Tutorial-BSSN_formulation.ipynb
@@ -4,6 +4,15 @@
    "cell_type": "markdown",
    "metadata": {},
    "source": [
+    "<script async src=\"https://www.googletagmanager.com/gtag/js?id=UA-59152712-8\"></script>\n",
+    "<script>\n",
+    "  window.dataLayer = window.dataLayer || [];\n",
+    "  function gtag(){dataLayer.push(arguments);}\n",
+    "  gtag('js', new Date());\n",
+    "\n",
+    "  gtag('config', 'UA-59152712-8');\n",
+    "</script>\n",
+    "\n",
     "# The BSSN Formulation of General Relativity in Generic Curvilinear Coordinates: An Overview\n",
     "\n",
     "## Author: Zach Etienne\n",

diff --git a/Tutorial-BSSN_quantities.ipynb b/Tutorial-BSSN_quantities.ipynb
@@ -4,6 +4,15 @@
    "cell_type": "markdown",
    "metadata": {},
    "source": [
+    "<script async src=\"https://www.googletagmanager.com/gtag/js?id=UA-59152712-8\"></script>\n",
+    "<script>\n",
+    "  window.dataLayer = window.dataLayer || [];\n",
+    "  function gtag(){dataLayer.push(arguments);}\n",
+    "  gtag('js', new Date());\n",
+    "\n",
+    "  gtag('config', 'UA-59152712-8');\n",
+    "</script>\n",
+    "\n",
     "# BSSN Quantities\n",
     "\n",
     "## Author: Zach Etienne\n",

diff --git a/Tutorial-BSSN_time_evolution-BSSN_RHSs.ipynb b/Tutorial-BSSN_time_evolution-BSSN_RHSs.ipynb
@@ -4,6 +4,15 @@
    "cell_type": "markdown",
    "metadata": {},
    "source": [
+    "<script async src=\"https://www.googletagmanager.com/gtag/js?id=UA-59152712-8\"></script>\n",
+    "<script>\n",
+    "  window.dataLayer = window.dataLayer || [];\n",
+    "  function gtag(){dataLayer.push(arguments);}\n",
+    "  gtag('js', new Date());\n",
+    "\n",
+    "  gtag('config', 'UA-59152712-8');\n",
+    "</script>\n",
+    "\n",
     "# The BSSN Time-Evolution Equations\n",
     "\n",
     "## Author: Zach Etienne\n",

diff --git a/Tutorial-BSSN_time_evolution-BSSN_gauge_RHSs.ipynb b/Tutorial-BSSN_time_evolution-BSSN_gauge_RHSs.ipynb
@@ -4,6 +4,15 @@
    "cell_type": "markdown",
    "metadata": {},
    "source": [
+    "<script async src=\"https://www.googletagmanager.com/gtag/js?id=UA-59152712-8\"></script>\n",
+    "<script>\n",
+    "  window.dataLayer = window.dataLayer || [];\n",
+    "  function gtag(){dataLayer.push(arguments);}\n",
+    "  gtag('js', new Date());\n",
+    "\n",
+    "  gtag('config', 'UA-59152712-8');\n",
+    "</script>\n",
+    "\n",
     "# BSSN Time-Evolution Equations for the Gauge Fields $\\alpha$ and $\\beta^i$\n",
     "\n",
     "## Author: Zach Etienne\n",

diff --git a/Tutorial-Coutput__Parameter_Interface.ipynb b/Tutorial-Coutput__Parameter_Interface.ipynb
@@ -4,6 +4,15 @@
    "cell_type": "markdown",
    "metadata": {},
    "source": [
+    "<script async src=\"https://www.googletagmanager.com/gtag/js?id=UA-59152712-8\"></script>\n",
+    "<script>\n",
+    "  window.dataLayer = window.dataLayer || [];\n",
+    "  function gtag(){dataLayer.push(arguments);}\n",
+    "  gtag('js', new Date());\n",
+    "\n",
+    "  gtag('config', 'UA-59152712-8');\n",
+    "</script>\n",
+    "\n",
     "# C Output and Parameter Interfaces\n",
     "\n",
     "## Author: Zach Etienne\n",