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Added ToPS
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@igorbonadio
igorbonadio committed Jul 21, 2014
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* [shark](http://image.diku.dk/shark/sphinx_pages/build/html/index.html)
* [Vowpal Wabbit (VW)](https://github.com/JohnLangford/vowpal_wabbit/wiki) - A fast out-of-core learning system.
* [sofia-ml](https://code.google.com/p/sofia-ml/) - Suite of fast incremental algorithms.
* [Shogun](https://github.com/shogun-toolbox/shogun) - The Shogun Machine Learning Toolbox
* [Shogun](https://github.com/shogun-toolbox/shogun) - The Shogun Machine Learning Toolbox
* [Caffe](http://caffe.berkeleyvision.org) - A deep learning framework developed with cleanliness, readability, and speed in mind. [DEEP LEARNING]
* [CUDA](https://code.google.com/p/cuda-convnet/) - This is a fast C++/CUDA implementation of convolutional [DEEP LEARNING]

#### Natural Language Processing
* [MIT Information Extraction Toolkit](https://github.com/mit-nlp/MITIE) - C, C++, and Python tools for named entity recognition and relation extraction

#### Sequence Analysis
* [ToPS](https://github.com/ayoshiaki/tops) - This is an objected-oriented framework that facilitates the integration of probabilistic models for sequences over a user defined alphabet.

## Clojure

#### Natural Language Processing
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#### General-Purpose Machine Learning

* [JSAT](https://code.google.com/p/java-statistical-analysis-tool/) - Numerous Machine Learning algoirhtms for classification, regresion, and clustering.
* [JSAT](https://code.google.com/p/java-statistical-analysis-tool/) - Numerous Machine Learning algoirhtms for classification, regresion, and clustering.
* [MLlib in Apache Spark](http://spark.apache.org/docs/latest/mllib-guide.html) - Distributed machine learning library in Spark
* [Mahout](https://github.com/apache/mahout) - Distributed machine learning
* [Stanford Classifier](http://nlp.stanford.edu/software/classifier.shtml) - A classifier is a machine learning tool that will take data items and place them into one of k classes.
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* [nngraph](https://github.com/torch/nngraph) - This package provides graphical computation for nn library in Torch7.
* [nnx](https://github.com/clementfarabet/lua---nnx) - A completely unstable and experimental package that extends Torch's builtin nn library
* [optim](https://github.com/torch/optim) - An optimization library for Torch. SGD, Adagrad, Conjugate-Gradient, LBFGS, RProp and more.
* [unsup](https://github.com/koraykv/unsup) - A package for unsupervised learning in Torch. Provides modules that are compatible with nn (LinearPsd, ConvPsd, AutoEncoder, ...), and self-contained algorithms (k-means, PCA).
* [unsup](https://github.com/koraykv/unsup) - A package for unsupervised learning in Torch. Provides modules that are compatible with nn (LinearPsd, ConvPsd, AutoEncoder, ...), and self-contained algorithms (k-means, PCA).
* [manifold](https://github.com/clementfarabet/manifold) - A package to manipulate manifolds
* [svm](https://github.com/koraykv/torch-svm) - Torch-SVM library
* [lbfgs](https://github.com/clementfarabet/lbfgs) - FFI Wrapper for liblbfgs
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* [cunn](https://github.com/torch/cunn) - Torch CUDA Neural Network Implementation
* [imgraph](https://github.com/clementfarabet/lua---imgraph) - An image/graph library for Torch. This package provides routines to construct graphs on images, segment them, build trees out of them, and convert them back to images.
* [videograph](https://github.com/clementfarabet/videograph) - A video/graph library for Torch. This package provides routines to construct graphs on videos, segment them, build trees out of them, and convert them back to videos.
* [saliency](https://github.com/marcoscoffier/torch-saliency) - code and tools around integral images. A library for finding interest points based on fast integral histograms.
* [saliency](https://github.com/marcoscoffier/torch-saliency) - code and tools around integral images. A library for finding interest points based on fast integral histograms.
* [stitch](https://github.com/marcoscoffier/lua---stitch) - allows us to use hugin to stitch images and apply same stitching to a video sequence
* [sfm](https://github.com/marcoscoffier/lua---sfm) - A bundle adjustment/structure from motion package
* [fex](https://github.com/koraykv/fex) - A package for feature extraction in Torch. Provides SIFT and dSIFT modules.
* [fex](https://github.com/koraykv/fex) - A package for feature extraction in Torch. Provides SIFT and dSIFT modules.
* [OverFeat](https://github.com/sermanet/OverFeat) - A state-of-the-art generic dense feature extractor
* [Numeric Lua](http://numlua.luaforge.net/)
* [Lunatic Python](http://labix.org/lunatic-python)
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* [Lunum](http://zrake.webfactional.com/projects/lunum)

#### Demos and Scripts
* [Core torch7 demos repository](https://github.com/e-lab/torch7-demos).
* [Core torch7 demos repository](https://github.com/e-lab/torch7-demos).
* linear-regression, logistic-regression
* face detector (training and detection as separate demos)
* mst-based-segmenter
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* [Shogun](https://github.com/shogun-toolbox/shogun) - The Shogun Machine Learning Toolbox
* [Pyevolve](https://github.com/perone/Pyevolve) - Genetic algorithm framework.
* [Caffe](http://caffe.berkeleyvision.org) - A deep learning framework developed with cleanliness, readability, and speed in mind.
* [Shogun](https://github.com/shogun-toolbox/shogun) - The Shogun Machine Learning Toolbox
* [Shogun](https://github.com/shogun-toolbox/shogun) - The Shogun Machine Learning Toolbox
* [breze](https://github.com/breze-no-salt/breze) - Theano based library for deep and recurrent neural networks

#### Data Analysis / Data Visualization
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