Faster Whisper transcription with CTranslate2

BioDiscoveryAgent is an LLM-based AI agent for closed-loop design of genetic perturbation experiments

Papers about explainability of GNNs

Arc Virtual Cell Atlas

Biological foundation modeling from molecular to genome scale

Inference and numerics for multi-hybrid AI model architectures

Genome modeling and design across all domains of life

Bob's Burgers Hamburger Making Nextflow Pipeline

Graph Machine Learning course, Xavier Bresson, 2023

A list of awesome GNN systems.

Papers about graph transformers.

A dataset of real DNA traces for benchmarking trace reconstruction algorithms

Official PyTorch implementation of SegFormer

Listing of papers about machine learning for proteins.

a tool for simulating nanopore raw signal data

Constructing a pangenome gene graph

Bot for TimeHeist Event 28/5/2023

Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)

Protein 3D structure prediction pipeline

A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.

Detection of m6A from direct RNA-Seq data

An open access book on scientific visualization using python and matplotlib

Identification of differential RNA modifications from nanopore direct RNA sequencing

Nanopore demultiplexing, QC and alignment pipeline

Nextflow pipeline wrapper for executing Cell Ranger

A versatile, fully open-source pipeline to extract phenotypic measurements from plant images