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1. genomics-analysis-pipeline genomics-analysis-pipeline Public

   Some useful bioinformatics pipelines for genomics analysis

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2. Pathway-gene-loss-analysis Pathway-gene-loss-analysis Public

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3. Anastatus_genome_project Anastatus_genome_project Public

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4. Kaks_Calculator2.0-for-genome-data Kaks_Calculator2.0-for-genome-data Public

   Some scripts for calculating dN and dS for all the individual genes in your dataset.

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5. Branch-length-analysis-for-protein-evolution Branch-length-analysis-for-protein-evolution Public

   Identify rapidly evolving genes by comparing the branch length. It can help us to identify which ortholog had the most amino acid substitutions after divergence from the common ancestor.

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6. PAML-branch-site-model PAML-branch-site-model Public

   Run genomic data using branch-site model in PAML to identify positive selected genes

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