Cross-landscape HOR clustering analysis

find_pattern.pyis the main workflow of the clustering analysis.

consensus_sequence.py is used to build the target HOR consensus sequence.

processNeedle.py is used to reformat HOR DNA sequences into 0-1 vectors.

recentExpand.py calculate the HOR exact matching number within a sliding window.

Plot.py generate the HOR clustering result tracks.

Software Dependencies

Name		Name	Last commit message	Last commit date
Latest commit History 2 Commits
.idea		.idea
Plot.py		Plot.py
README.md		README.md
__init__.py		__init__.py
consensus_sequence.py		consensus_sequence.py
find_pattern.py		find_pattern.py
processNeedle.py		processNeedle.py
recentExpand.py		recentExpand.py