FAVORannotator_csv

xihaoli · Feb 24, 2024 · 830d10e · 830d10e
1 parent 792f1c4
commit 830d10e
Show file tree

Hide file tree

Showing 3 changed files with 3 additions and 3 deletions.
diff --git a/FAVORannotator_csv/Annotate.R b/FAVORannotator_csv/Annotate.R
@@ -20,7 +20,7 @@ DB_path <- "/path_to_the_FAVOR_database/n/holystore01/LABS/xlin/Lab/xihao_zilin/
 ### anno channel (subset)
 anno_colnum <- c(1,8:12,15,16,19,23,25:36)
 
-## input array id from batch file
+### input array id from batch file
 chr <- as.numeric(commandArgs(TRUE)[1])
 
 ###########################################################################

diff --git a/FAVORannotator_csv/Varinfo_gds.R b/FAVORannotator_csv/Varinfo_gds.R
@@ -13,7 +13,7 @@ gds_file_name_1 <- "freeze.5.chr"
 gds_file_name_2 <- ".pass_and_fail.gtonly.minDP0.gds"
 ### output
 output_path <- "/path_to_the_output_file/"
-## input array id from batch file
+### input array id from batch file
 chr <- as.numeric(commandArgs(TRUE)[1])
 
 ###########################################################################

diff --git a/FAVORannotator_csv/gds2agds.R b/FAVORannotator_csv/gds2agds.R
@@ -13,7 +13,7 @@ gds_file_name_2 <- ".pass_and_fail.gtonly.minDP0.gds"
 dir_anno <- "/path_to_the_annotation_file/"
 anno_file_name_1 <- "Anno_chr"
 anno_file_name_2 <- "_STAARpipeline.csv"
-## input array id from batch file
+### input array id from batch file
 chr <- as.numeric(commandArgs(TRUE)[1])
 
 ###########################################################################