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  1. possvm-orthology possvm-orthology Public

    Possvm: find clusters of orthologs in phylogenies using species overlap & MCL

    Python 11

  2. placozoa-cell-type-evolution-code placozoa-cell-type-evolution-code Public

    Code for our work on cell type evolution in placozoans (Najle, Grau-Bové et al., Cell 2023)

    6 1

  3. recoded-mixture-models recoded-mixture-models Public

    Protein mixture models for recoded amino-acid matrices in IQ-TREE

    R 2

  4. ace1-anopheles-report ace1-anopheles-report Public

    Genetic diversity and evolution of the Ace1 insecticide resistance gene in Anopheles mosquitoes, using Ag1000G data

    Jupyter Notebook

  5. rdl-Agam-evolution rdl-Agam-evolution Public

    Genetic diversity and evolution of the Rdl insecticide resistance gene in Anopheles mosquitoes, using Ag1000G data

    Jupyter Notebook 1

  6. cyp6-AgUganda cyp6-AgUganda Public

    Analysis of haplotype diversity in the CYP6 gene cluster of Ugandan Anopheles gambiae, using Ag1000 data

    Jupyter Notebook