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Child dict refactor (also removes anytree dependency) #76

Merged
merged 51 commits into from
Apr 27, 2022
Merged

Child dict refactor (also removes anytree dependency) #76

merged 51 commits into from
Apr 27, 2022

Commits on Feb 19, 2022

  1. draft implementation of a TreeNode class which stores children in a dict

    @TomNicholas
    TomNicholas committed Feb 19, 2022
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Commits on Feb 21, 2022

  1. separate path-like access out into mixin

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    TomNicholas committed Feb 21, 2022
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  2. pseudocode for node getter

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    TomNicholas committed Feb 21, 2022
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  3. basic idea for a path-like object which inherits from pathlib

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    TomNicholas committed Feb 21, 2022
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  4. Merge branch 'NodePath_inherited_from_pathlib' into child_dict_refactor

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    TomNicholas committed Feb 21, 2022
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  5. pass type checking

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    TomNicholas committed Feb 21, 2022
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Commits on Mar 3, 2022

  1. implement attach

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    TomNicholas committed Mar 3, 2022
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Commits on Apr 21, 2022

  1. Merge branch 'main' into child_dict_refactor

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    TomNicholas committed Apr 21, 2022
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  2. consolidate tree classes

    @TomNicholas
    TomNicholas committed Apr 21, 2022
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  3. [pre-commit.ci] auto fixes from pre-commit.com hooks 

    for more information, see https://pre-commit.ci
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    pre-commit-ci[bot] committed Apr 21, 2022
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Commits on Apr 24, 2022

  1. passes some basic family tree tests

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    TomNicholas committed Apr 24, 2022
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Commits on Apr 25, 2022

  1. frozen children

    @TomNicholas
    TomNicholas committed Apr 25, 2022
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  2. passes all basic family tree tests

    @TomNicholas
    TomNicholas committed Apr 25, 2022
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  3. Merge branch 'child_dict_refactor' of https://github.com/TomNicholas/… 

    …datatree into child_dict_refactor
    @TomNicholas
    TomNicholas committed Apr 25, 2022
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  4. [pre-commit.ci] auto fixes from pre-commit.com hooks 

    for more information, see https://pre-commit.ci
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    pre-commit-ci[bot] committed Apr 25, 2022
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  5. copied iterators code over from anytree

    @TomNicholas
    TomNicholas committed Apr 25, 2022
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  6. get nodes with path-like syntax

    @TomNicholas
    TomNicholas committed Apr 25, 2022
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  7. relative path method

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    TomNicholas committed Apr 25, 2022
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  8. Merge branch 'child_dict_refactor' of https://github.com/TomNicholas/… 

    …datatree into child_dict_refactor
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  9. [pre-commit.ci] auto fixes from pre-commit.com hooks 

    for more information, see https://pre-commit.ci
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    pre-commit-ci[bot] committed Apr 25, 2022
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Commits on Apr 26, 2022

  1. set and get node methods

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    TomNicholas committed Apr 26, 2022
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  2. Merge branch 'child_dict_refactor' of https://github.com/TomNicholas/… 

    …datatree into child_dict_refactor
    @TomNicholas
    TomNicholas committed Apr 26, 2022
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  3. Merge branch 'iterators' into child_dict_refactor

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    TomNicholas committed Apr 26, 2022
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  4. copy anytree iterators

    @TomNicholas
    TomNicholas committed Apr 26, 2022
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  5. add anytree license

    @TomNicholas
    TomNicholas committed Apr 26, 2022
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  6. change iterator import

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    TomNicholas committed Apr 26, 2022
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  7. copy anytree's string renderer

    @TomNicholas
    TomNicholas committed Apr 26, 2022
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  8. renderer

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    TomNicholas committed Apr 26, 2022
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  9. refactored treenode to use .get

    @TomNicholas
    TomNicholas committed Apr 26, 2022
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  10. black

    @TomNicholas
    TomNicholas committed Apr 26, 2022
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  11. updated datatree tests to match new path API

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    TomNicholas committed Apr 26, 2022
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  12. moved io tests to their own file

    @TomNicholas
    TomNicholas committed Apr 26, 2022
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  13. reimplemented getitem in terms of .get

    @TomNicholas
    TomNicholas committed Apr 26, 2022
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Commits on Apr 27, 2022

  1. reimplemented setitem in terms of .update

    @TomNicholas
    TomNicholas committed Apr 27, 2022
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  2. remove anytree dependency

    @TomNicholas
    TomNicholas committed Apr 27, 2022
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  3. from_dict constructor

    @TomNicholas
    TomNicholas committed Apr 27, 2022
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  4. string representation of tree

    @TomNicholas
    TomNicholas committed Apr 27, 2022
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  5. fixed tree diff

    @TomNicholas
    TomNicholas committed Apr 27, 2022
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  6. fixed io

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    TomNicholas committed Apr 27, 2022
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  7. removed cheeky print statements

    @TomNicholas
    TomNicholas committed Apr 27, 2022
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  8. fixed isomorphism checking

    @TomNicholas
    TomNicholas committed Apr 27, 2022
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  9. fixed map_over_subtree

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    TomNicholas committed Apr 27, 2022
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  10. removed now-uneeded utils.py compatibility functions

    @TomNicholas
    TomNicholas committed Apr 27, 2022
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  11. fixed tests for mapped dataset api methods

    @TomNicholas
    TomNicholas committed Apr 27, 2022
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  12. updated API docs

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    TomNicholas committed Apr 27, 2022
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  13. reimplement __setitem__ in terms of _set

    @TomNicholas
    TomNicholas committed Apr 27, 2022
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  14. fixed bug by ensuring name of child node is changed to match key it i… 

    …s stored under
    @TomNicholas
    TomNicholas committed Apr 27, 2022
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  15. updated docs

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    TomNicholas committed Apr 27, 2022
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  16. added whats-new, and put all changes from this PR in it

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    TomNicholas committed Apr 27, 2022
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  17. added summary of previous versions

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    TomNicholas committed Apr 27, 2022
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  18. remove outdated ._add_child method

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    TomNicholas committed Apr 27, 2022
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