Regulatory RNN

Reimplementation of "Finding gene network topologies for given biological function with recurrent neural network" (Shen et al. 2020) for educational purposes¹.

Main changes are in modularity, using torch instead of tensorflow, adding default plotting functionality, and building a pypi package for easy distribution.

Installation:

pip install regulatory_rnn

Usage examples can be found in the notebooks folder.

Footnotes

1. Original repository: https://github.com/sjx93/rnn_for_gene_network_2020 ↩