update framework

wuguo5982 · May 10, 2022 · 1068260 · 1068260
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diff --git a/LICENSE b/LICENSE
@@ -1,6 +1,6 @@
 MIT License
 
-Copyright (c) 2020 Vijay Prakash Dwivedi, Chaitanya K. Joshi, Thomas Laurent, Yoshua Bengio, Xavier Bresson
+Copyright (c) 2022 Vijay Prakash Dwivedi, Chaitanya K. Joshi, Anh Tuan Luu, Thomas Laurent, Yoshua Bengio, Xavier Bresson
 
 Permission is hereby granted, free of charge, to any person obtaining a copy
 of this software and associated documentation files (the "Software"), to deal

diff --git a/README.md b/README.md
@@ -6,10 +6,12 @@
 
 ## Updates
 
-**Nov 2, 2020**
-* Project based on DGL 0.5.2. See the relevant dependencies defined in the environment yml files ([CPU](./environment_cpu.yml), [GPU](./environment_gpu.yml)).
-	+ Numerical experiments report faster training times with DGL 0.4.2 compared to DGL 0.5.2.
-	+ For the version of the project compatible with DGL 0.4.2 and relevant dependencies, please use the [master branch](https://github.com/graphdeeplearning/benchmarking-gnns/tree/master).
+**May 10, 2022**
+* Project based on DGL 0.6.2 and higher. See the relevant dependencies defined in the environment yml files ([CPU](./environment_cpu.yml), [GPU](./environment_gpu.yml)).  
+* Updated technical report of the framework on [ArXiv](https://arxiv.org/pdf/2003.00982.pdf)
+* Added AQSOL dataset, which is similar to ZINC for graph regression task, but has a real-world measured chemical target. 
+* Added mathematical datasets -- GraphTheoryProp and CYCLES which are useful to test GNNs on specific theoretical graph properties.  
+* Fixed [issue #57](https://github.com/graphdeeplearning/benchmarking-gnns/issues/57).  
 
 **Oct 7, 2020**
 * Repo updated to DGL 0.5.2 and PyTorch 1.6.0. Please update your environment using yml files ([CPU](./environment_cpu.yml), [GPU](./environment_gpu.yml)).
@@ -80,7 +82,7 @@
 
 ## 7. Leaderboards
 
-[Leaderboards](./docs/07_leaderboards.md) of GNN models on each dataset. [Instructions](./docs/07_contribute_leaderboards.md) to contribute to leaderboards.
+Full leaderboards coming soon on [paperswithcode.com](https://paperswithcode.com/paper/benchmarking-graph-neural-networks).
 
 
 <br>
@@ -91,7 +93,7 @@
 ```
 @article{dwivedi2020benchmarkgnns,
   title={Benchmarking Graph Neural Networks},
-  author={Dwivedi, Vijay Prakash and Joshi, Chaitanya K and Laurent, Thomas and Bengio, Yoshua and Bresson, Xavier},
+  author={Dwivedi, Vijay Prakash and Joshi, Chaitanya K and Luu, Anh Tuan and Laurent, Thomas and Bengio, Yoshua and Bresson, Xavier},
   journal={arXiv preprint arXiv:2003.00982},
   year={2020}
 }

diff --git a/configs/COLLAB_edge_classification_GAT_40k.json b/configs/COLLAB_edge_classification_GAT_40k.json
diff --git a/configs/COLLAB_edge_classification_GAT_edgefeat.json b/configs/COLLAB_edge_classification_GAT_edgefeat.json
diff --git a/configs/COLLAB_edge_classification_GAT_edgereprfeat.json b/configs/COLLAB_edge_classification_GAT_edgereprfeat.json
diff --git a/configs/COLLAB_edge_classification_GAT_isotropic.json b/configs/COLLAB_edge_classification_GAT_isotropic.json
diff --git a/configs/COLLAB_edge_classification_GCN_40k.json b/configs/COLLAB_edge_classification_GCN_40k.json
diff --git a/configs/COLLAB_edge_classification_GIN_40k.json b/configs/COLLAB_edge_classification_GIN_40k.json
diff --git a/configs/COLLAB_edge_classification_GatedGCN_40k.json b/configs/COLLAB_edge_classification_GatedGCN_40k.json
diff --git a/configs/COLLAB_edge_classification_GatedGCN_PE_40k.json b/configs/COLLAB_edge_classification_GatedGCN_PE_40k.json
diff --git a/configs/COLLAB_edge_classification_GatedGCN_edgefeat.json b/configs/COLLAB_edge_classification_GatedGCN_edgefeat.json
diff --git a/configs/COLLAB_edge_classification_GatedGCN_edgereprfeat.json b/configs/COLLAB_edge_classification_GatedGCN_edgereprfeat.json
diff --git a/configs/COLLAB_edge_classification_GatedGCN_isotropic.json b/configs/COLLAB_edge_classification_GatedGCN_isotropic.json
diff --git a/configs/COLLAB_edge_classification_GraphSage_40k.json b/configs/COLLAB_edge_classification_GraphSage_40k.json
diff --git a/configs/COLLAB_edge_classification_GraphSage_edgefeat.json b/configs/COLLAB_edge_classification_GraphSage_edgefeat.json
diff --git a/configs/COLLAB_edge_classification_GraphSage_edgereprfeat.json b/configs/COLLAB_edge_classification_GraphSage_edgereprfeat.json
diff --git a/configs/COLLAB_edge_classification_GraphSage_isotropic.json b/configs/COLLAB_edge_classification_GraphSage_isotropic.json
diff --git a/configs/COLLAB_edge_classification_MF.json b/configs/COLLAB_edge_classification_MF.json
diff --git a/configs/COLLAB_edge_classification_MLP_40k.json b/configs/COLLAB_edge_classification_MLP_40k.json
diff --git a/configs/COLLAB_edge_classification_MoNet_40k.json b/configs/COLLAB_edge_classification_MoNet_40k.json
diff --git a/configs/CSL_graph_classification_3WLGNN_CSL_100k.json b/configs/CSL_graph_classification_3WLGNN_CSL_100k.json
diff --git a/configs/CSL_graph_classification_3WLGNN_CSL_PE_100k.json b/configs/CSL_graph_classification_3WLGNN_CSL_PE_100k.json
diff --git a/configs/CSL_graph_classification_GAT_CSL_100k.json b/configs/CSL_graph_classification_GAT_CSL_100k.json
diff --git a/configs/CSL_graph_classification_GAT_CSL_PE_100k.json b/configs/CSL_graph_classification_GAT_CSL_PE_100k.json
diff --git a/configs/CSL_graph_classification_GCN_CSL_100k.json b/configs/CSL_graph_classification_GCN_CSL_100k.json
diff --git a/configs/CSL_graph_classification_GCN_CSL_PE_100k.json b/configs/CSL_graph_classification_GCN_CSL_PE_100k.json
diff --git a/configs/CSL_graph_classification_GIN_CSL_100k.json b/configs/CSL_graph_classification_GIN_CSL_100k.json
diff --git a/configs/CSL_graph_classification_GIN_CSL_PE_100k.json b/configs/CSL_graph_classification_GIN_CSL_PE_100k.json
diff --git a/configs/CSL_graph_classification_GatedGCN_CSL_100k.json b/configs/CSL_graph_classification_GatedGCN_CSL_100k.json
diff --git a/configs/CSL_graph_classification_GatedGCN_CSL_PE_100k.json b/configs/CSL_graph_classification_GatedGCN_CSL_PE_100k.json
diff --git a/configs/CSL_graph_classification_GraphSage_CSL_100k.json b/configs/CSL_graph_classification_GraphSage_CSL_100k.json
diff --git a/configs/CSL_graph_classification_GraphSage_CSL_PE_100k.json b/configs/CSL_graph_classification_GraphSage_CSL_PE_100k.json
diff --git a/configs/CSL_graph_classification_MLP_CSL_100k.json b/configs/CSL_graph_classification_MLP_CSL_100k.json
diff --git a/configs/CSL_graph_classification_MLP_CSL_PE_100k.json b/configs/CSL_graph_classification_MLP_CSL_PE_100k.json
diff --git a/configs/CSL_graph_classification_MoNet_CSL_100k.json b/configs/CSL_graph_classification_MoNet_CSL_100k.json
diff --git a/configs/CSL_graph_classification_MoNet_CSL_PE_100k.json b/configs/CSL_graph_classification_MoNet_CSL_PE_100k.json
diff --git a/configs/CSL_graph_classification_RingGNN_CSL_100k.json b/configs/CSL_graph_classification_RingGNN_CSL_100k.json
diff --git a/configs/CSL_graph_classification_RingGNN_CSL_PE_100k.json b/configs/CSL_graph_classification_RingGNN_CSL_PE_100k.json
diff --git a/configs/CYCLES_graph_classification_GIN_CYCLES_100k.json b/configs/CYCLES_graph_classification_GIN_CYCLES_100k.json
@@ -15,7 +15,7 @@
         "batch_size": 25,
         "init_lr": 1e-4,
         "lr_reduce_factor": 0.5,
-        "lr_schedule_patience": 5,
+        "lr_schedule_patience": 10,
         "min_lr": 1e-6,
         "weight_decay": 0.0,
         "print_epoch_interval": 5,

diff --git a/configs/CYCLES_graph_classification_GIN_PE_CYCLES_100k.json b/configs/CYCLES_graph_classification_GIN_PE_CYCLES_100k.json
@@ -15,7 +15,7 @@
         "batch_size": 25,
         "init_lr": 1e-4,
         "lr_reduce_factor": 0.5,
-        "lr_schedule_patience": 5,
+        "lr_schedule_patience": 10,
         "min_lr": 1e-6,
         "weight_decay": 0.0,
         "print_epoch_interval": 5,

diff --git a/configs/CYCLES_graph_classification_GatedGCN_CYCLES_100k.json b/configs/CYCLES_graph_classification_GatedGCN_CYCLES_100k.json
@@ -15,7 +15,7 @@
         "batch_size": 25,
         "init_lr": 1e-4,
         "lr_reduce_factor": 0.5,
-        "lr_schedule_patience": 5,
+        "lr_schedule_patience": 10,
         "min_lr": 1e-6,
         "weight_decay": 0.0,
         "print_epoch_interval": 5,

diff --git a/configs/CYCLES_graph_classification_GatedGCN_PE_CYCLES_100k.json b/configs/CYCLES_graph_classification_GatedGCN_PE_CYCLES_100k.json
@@ -15,7 +15,7 @@
         "batch_size": 25,
         "init_lr": 1e-4,
         "lr_reduce_factor": 0.5,
-        "lr_schedule_patience": 15,
+        "lr_schedule_patience": 10,
         "min_lr": 1e-6,
         "weight_decay": 0.0,
         "print_epoch_interval": 5,

diff --git a/configs/GraphTheoryProp_multitask_GIN_GraphTheoryProp_100k.json b/configs/GraphTheoryProp_multitask_GIN_GraphTheoryProp_100k.json
diff --git a/configs/GraphTheoryProp_multitask_GIN_PE_GraphTheoryProp_100k.json b/configs/GraphTheoryProp_multitask_GIN_PE_GraphTheoryProp_100k.json
diff --git a/configs/GraphTheoryProp_multitask_GatedGCN_GraphTheoryProp_100k.json b/configs/GraphTheoryProp_multitask_GatedGCN_GraphTheoryProp_100k.json
diff --git a/configs/GraphTheoryProp_multitask_GatedGCN_PE_GraphTheoryProp_100k.json b/configs/GraphTheoryProp_multitask_GatedGCN_PE_GraphTheoryProp_100k.json
diff --git a/configs/SBMs_node_clustering_3WLGNN_CLUSTER_100k.json b/configs/SBMs_node_clustering_3WLGNN_CLUSTER_100k.json
diff --git a/configs/SBMs_node_clustering_3WLGNN_CLUSTER_500k.json b/configs/SBMs_node_clustering_3WLGNN_CLUSTER_500k.json
diff --git a/configs/SBMs_node_clustering_3WLGNN_CLUSTER_L8_500k.json b/configs/SBMs_node_clustering_3WLGNN_CLUSTER_L8_500k.json
diff --git a/configs/SBMs_node_clustering_3WLGNN_PATTERN_100k.json b/configs/SBMs_node_clustering_3WLGNN_PATTERN_100k.json
diff --git a/configs/SBMs_node_clustering_3WLGNN_PATTERN_500k.json b/configs/SBMs_node_clustering_3WLGNN_PATTERN_500k.json
diff --git a/configs/SBMs_node_clustering_3WLGNN_PATTERN_L8_500k.json b/configs/SBMs_node_clustering_3WLGNN_PATTERN_L8_500k.json
diff --git a/configs/SBMs_node_clustering_GAT_CLUSTER_100k.json b/configs/SBMs_node_clustering_GAT_CLUSTER_100k.json
diff --git a/configs/SBMs_node_clustering_GAT_CLUSTER_500k.json b/configs/SBMs_node_clustering_GAT_CLUSTER_500k.json
diff --git a/configs/SBMs_node_clustering_GAT_PATTERN_100k.json b/configs/SBMs_node_clustering_GAT_PATTERN_100k.json
diff --git a/configs/SBMs_node_clustering_GAT_PATTERN_500k.json b/configs/SBMs_node_clustering_GAT_PATTERN_500k.json
diff --git a/configs/SBMs_node_clustering_GCN_CLUSTER_100k.json b/configs/SBMs_node_clustering_GCN_CLUSTER_100k.json
diff --git a/configs/SBMs_node_clustering_GCN_CLUSTER_500k.json b/configs/SBMs_node_clustering_GCN_CLUSTER_500k.json
diff --git a/configs/SBMs_node_clustering_GCN_PATTERN_100k.json b/configs/SBMs_node_clustering_GCN_PATTERN_100k.json
diff --git a/configs/SBMs_node_clustering_GCN_PATTERN_500k.json b/configs/SBMs_node_clustering_GCN_PATTERN_500k.json
diff --git a/configs/SBMs_node_clustering_GIN_CLUSTER_100k.json b/configs/SBMs_node_clustering_GIN_CLUSTER_100k.json
diff --git a/configs/SBMs_node_clustering_GIN_CLUSTER_500k.json b/configs/SBMs_node_clustering_GIN_CLUSTER_500k.json
diff --git a/configs/SBMs_node_clustering_GIN_PATTERN_100k.json b/configs/SBMs_node_clustering_GIN_PATTERN_100k.json
diff --git a/configs/SBMs_node_clustering_GIN_PATTERN_500k.json b/configs/SBMs_node_clustering_GIN_PATTERN_500k.json
diff --git a/configs/SBMs_node_clustering_GatedGCN_CLUSTER_100k.json b/configs/SBMs_node_clustering_GatedGCN_CLUSTER_100k.json
diff --git a/configs/SBMs_node_clustering_GatedGCN_CLUSTER_500k.json b/configs/SBMs_node_clustering_GatedGCN_CLUSTER_500k.json
diff --git a/configs/SBMs_node_clustering_GatedGCN_CLUSTER_PE_500k.json b/configs/SBMs_node_clustering_GatedGCN_CLUSTER_PE_500k.json
diff --git a/configs/SBMs_node_clustering_GatedGCN_PATTERN_100k.json b/configs/SBMs_node_clustering_GatedGCN_PATTERN_100k.json
diff --git a/configs/SBMs_node_clustering_GatedGCN_PATTERN_500k.json b/configs/SBMs_node_clustering_GatedGCN_PATTERN_500k.json
diff --git a/configs/SBMs_node_clustering_GatedGCN_PATTERN_PE_500k.json b/configs/SBMs_node_clustering_GatedGCN_PATTERN_PE_500k.json
diff --git a/configs/SBMs_node_clustering_GraphSage_CLUSTER_100k.json b/configs/SBMs_node_clustering_GraphSage_CLUSTER_100k.json
diff --git a/configs/SBMs_node_clustering_GraphSage_CLUSTER_500k.json b/configs/SBMs_node_clustering_GraphSage_CLUSTER_500k.json
diff --git a/configs/SBMs_node_clustering_GraphSage_PATTERN_100k.json b/configs/SBMs_node_clustering_GraphSage_PATTERN_100k.json
diff --git a/configs/SBMs_node_clustering_GraphSage_PATTERN_500k.json b/configs/SBMs_node_clustering_GraphSage_PATTERN_500k.json
diff --git a/configs/SBMs_node_clustering_MLP_CLUSTER_100k.json b/configs/SBMs_node_clustering_MLP_CLUSTER_100k.json
diff --git a/configs/SBMs_node_clustering_MLP_CLUSTER_500k.json b/configs/SBMs_node_clustering_MLP_CLUSTER_500k.json
diff --git a/configs/SBMs_node_clustering_MLP_PATTERN_100k.json b/configs/SBMs_node_clustering_MLP_PATTERN_100k.json
diff --git a/configs/SBMs_node_clustering_MLP_PATTERN_500k.json b/configs/SBMs_node_clustering_MLP_PATTERN_500k.json
diff --git a/configs/SBMs_node_clustering_MoNet_CLUSTER_100k.json b/configs/SBMs_node_clustering_MoNet_CLUSTER_100k.json
diff --git a/configs/SBMs_node_clustering_MoNet_CLUSTER_500k.json b/configs/SBMs_node_clustering_MoNet_CLUSTER_500k.json
diff --git a/configs/SBMs_node_clustering_MoNet_PATTERN_100k.json b/configs/SBMs_node_clustering_MoNet_PATTERN_100k.json
diff --git a/configs/SBMs_node_clustering_MoNet_PATTERN_500k.json b/configs/SBMs_node_clustering_MoNet_PATTERN_500k.json
diff --git a/configs/SBMs_node_clustering_RingGNN_CLUSTER_100k.json b/configs/SBMs_node_clustering_RingGNN_CLUSTER_100k.json
diff --git a/configs/SBMs_node_clustering_RingGNN_CLUSTER_500k.json b/configs/SBMs_node_clustering_RingGNN_CLUSTER_500k.json
diff --git a/configs/SBMs_node_clustering_RingGNN_CLUSTER_L8_500k.json b/configs/SBMs_node_clustering_RingGNN_CLUSTER_L8_500k.json
diff --git a/configs/SBMs_node_clustering_RingGNN_PATTERN_100k.json b/configs/SBMs_node_clustering_RingGNN_PATTERN_100k.json
diff --git a/configs/SBMs_node_clustering_RingGNN_PATTERN_500k.json b/configs/SBMs_node_clustering_RingGNN_PATTERN_500k.json
diff --git a/configs/SBMs_node_clustering_RingGNN_PATTERN_L8_500k.json b/configs/SBMs_node_clustering_RingGNN_PATTERN_L8_500k.json
diff --git a/configs/TSP_edge_classification_3WLGNN_100k.json b/configs/TSP_edge_classification_3WLGNN_100k.json
diff --git a/configs/TSP_edge_classification_GAT_100k.json b/configs/TSP_edge_classification_GAT_100k.json
diff --git a/configs/TSP_edge_classification_GAT_edgefeat.json b/configs/TSP_edge_classification_GAT_edgefeat.json
diff --git a/configs/TSP_edge_classification_GAT_edgereprfeat.json b/configs/TSP_edge_classification_GAT_edgereprfeat.json
diff --git a/configs/TSP_edge_classification_GAT_isotropic.json b/configs/TSP_edge_classification_GAT_isotropic.json
diff --git a/configs/TSP_edge_classification_GCN_100k.json b/configs/TSP_edge_classification_GCN_100k.json
diff --git a/configs/TSP_edge_classification_GIN_100k.json b/configs/TSP_edge_classification_GIN_100k.json
diff --git a/configs/TSP_edge_classification_GatedGCN_100k.json b/configs/TSP_edge_classification_GatedGCN_100k.json
diff --git a/configs/TSP_edge_classification_GatedGCN_edgefeat.json b/configs/TSP_edge_classification_GatedGCN_edgefeat.json
diff --git a/configs/TSP_edge_classification_GatedGCN_edgereprfeat.json b/configs/TSP_edge_classification_GatedGCN_edgereprfeat.json
diff --git a/configs/TSP_edge_classification_GatedGCN_isotropic.json b/configs/TSP_edge_classification_GatedGCN_isotropic.json
diff --git a/configs/TSP_edge_classification_GraphSage_100k.json b/configs/TSP_edge_classification_GraphSage_100k.json
diff --git a/configs/TSP_edge_classification_MLP_100k.json b/configs/TSP_edge_classification_MLP_100k.json
diff --git a/configs/TSP_edge_classification_MoNet_100k.json b/configs/TSP_edge_classification_MoNet_100k.json
diff --git a/configs/TSP_edge_classification_RingGNN_100k.json b/configs/TSP_edge_classification_RingGNN_100k.json
diff --git a/configs/TUs_graph_classification_3WLGNN_DD_100k.json b/configs/TUs_graph_classification_3WLGNN_DD_100k.json
diff --git a/configs/TUs_graph_classification_3WLGNN_ENZYMES_100k.json b/configs/TUs_graph_classification_3WLGNN_ENZYMES_100k.json
diff --git a/configs/TUs_graph_classification_3WLGNN_PROTEINS_full_100k.json b/configs/TUs_graph_classification_3WLGNN_PROTEINS_full_100k.json
diff --git a/configs/TUs_graph_classification_GAT_DD_100k.json b/configs/TUs_graph_classification_GAT_DD_100k.json
diff --git a/configs/TUs_graph_classification_GAT_ENZYMES_100k.json b/configs/TUs_graph_classification_GAT_ENZYMES_100k.json
diff --git a/configs/TUs_graph_classification_GAT_PROTEINS_full_100k.json b/configs/TUs_graph_classification_GAT_PROTEINS_full_100k.json
diff --git a/configs/TUs_graph_classification_GCN_DD_100k.json b/configs/TUs_graph_classification_GCN_DD_100k.json
diff --git a/configs/TUs_graph_classification_GCN_ENZYMES_100k.json b/configs/TUs_graph_classification_GCN_ENZYMES_100k.json
diff --git a/configs/TUs_graph_classification_GCN_PROTEINS_full_100k.json b/configs/TUs_graph_classification_GCN_PROTEINS_full_100k.json
diff --git a/configs/TUs_graph_classification_GIN_DD_100k.json b/configs/TUs_graph_classification_GIN_DD_100k.json
diff --git a/configs/TUs_graph_classification_GIN_ENZYMES_100k.json b/configs/TUs_graph_classification_GIN_ENZYMES_100k.json
diff --git a/configs/TUs_graph_classification_GIN_PROTEINS_full_100k.json b/configs/TUs_graph_classification_GIN_PROTEINS_full_100k.json
diff --git a/configs/TUs_graph_classification_GatedGCN_DD_100k.json b/configs/TUs_graph_classification_GatedGCN_DD_100k.json
diff --git a/configs/TUs_graph_classification_GatedGCN_ENZYMES_100k.json b/configs/TUs_graph_classification_GatedGCN_ENZYMES_100k.json
diff --git a/configs/TUs_graph_classification_GatedGCN_PROTEINS_full_100k.json b/configs/TUs_graph_classification_GatedGCN_PROTEINS_full_100k.json
diff --git a/configs/TUs_graph_classification_GraphSage_DD_100k.json b/configs/TUs_graph_classification_GraphSage_DD_100k.json
diff --git a/configs/TUs_graph_classification_GraphSage_ENZYMES_100k.json b/configs/TUs_graph_classification_GraphSage_ENZYMES_100k.json
diff --git a/configs/TUs_graph_classification_GraphSage_PROTEINS_full_100k.json b/configs/TUs_graph_classification_GraphSage_PROTEINS_full_100k.json
diff --git a/configs/TUs_graph_classification_MLP_DD_100k.json b/configs/TUs_graph_classification_MLP_DD_100k.json
diff --git a/configs/TUs_graph_classification_MLP_ENZYMES_100k.json b/configs/TUs_graph_classification_MLP_ENZYMES_100k.json
diff --git a/configs/TUs_graph_classification_MLP_PROTEINS_full_100k.json b/configs/TUs_graph_classification_MLP_PROTEINS_full_100k.json
diff --git a/configs/TUs_graph_classification_MoNet_DD_100k.json b/configs/TUs_graph_classification_MoNet_DD_100k.json
diff --git a/configs/TUs_graph_classification_MoNet_ENZYMES_100k.json b/configs/TUs_graph_classification_MoNet_ENZYMES_100k.json
diff --git a/configs/TUs_graph_classification_MoNet_PROTEINS_full_100k.json b/configs/TUs_graph_classification_MoNet_PROTEINS_full_100k.json
diff --git a/configs/TUs_graph_classification_RingGNN_DD_100k.json b/configs/TUs_graph_classification_RingGNN_DD_100k.json
diff --git a/configs/TUs_graph_classification_RingGNN_ENZYMES_100k.json b/configs/TUs_graph_classification_RingGNN_ENZYMES_100k.json
diff --git a/configs/TUs_graph_classification_RingGNN_PROTEINS_full_100k.json b/configs/TUs_graph_classification_RingGNN_PROTEINS_full_100k.json
diff --git a/configs/WikiCS_node_classification_GAT_100k.json b/configs/WikiCS_node_classification_GAT_100k.json
@@ -0,0 +1,36 @@
+{
+    "gpu": {
+        "use": true,
+        "id": 0
+    },
+
+    "model": "GAT",
+    "dataset": "WikiCS",
+
+    "out_dir": "out/WikiCS_node_classification/",
+
+    "params": {
+        "seed": 41,
+        "epochs": 1000,
+        "init_lr": 1e-2,
+        "lr_reduce_factor": 0.5,
+        "lr_schedule_patience": 25,
+        "min_lr": 1e-5,
+        "weight_decay": 5e-4,
+        "print_epoch_interval": 5,
+        "max_time": 24
+    },
+
+    "net_params": {
+        "L": 4,
+        "n_heads": 8,
+        "hidden_dim": 15,
+        "out_dim": 120,
+        "residual": true,
+        "readout": "mean",
+        "in_feat_dropout": 0.0,
+        "dropout": 0.35,
+        "batch_norm": true,
+        "self_loop": false
+    }
+}
diff --git a/configs/WikiCS_node_classification_GCN_100k.json b/configs/WikiCS_node_classification_GCN_100k.json
@@ -0,0 +1,35 @@
+{
+    "gpu": {
+        "use": true,
+        "id": 0
+    },
+
+    "model": "GCN",
+    "dataset": "WikiCS",
+
+    "out_dir": "out/WikiCS_node_classification/",
+
+    "params": {
+        "seed": 41,
+        "epochs": 1000,
+        "init_lr": 1e-2,
+        "lr_reduce_factor": 0.5,
+        "lr_schedule_patience": 25,
+        "min_lr": 1e-5,
+        "weight_decay": 5e-4,
+        "print_epoch_interval": 5,
+        "max_time": 24
+    },
+
+    "net_params": {
+        "L": 4,
+        "hidden_dim": 120,
+        "out_dim": 120,
+        "residual": true,
+        "readout": "mean",
+        "in_feat_dropout": 0.0,
+        "dropout": 0.35,
+        "batch_norm": true,
+        "self_loop": false
+    }
+}
diff --git a/configs/WikiCS_node_classification_GIN_100k.json b/configs/WikiCS_node_classification_GIN_100k.json
@@ -0,0 +1,36 @@
+{
+    "gpu": {
+        "use": true,
+        "id": 0
+    },
+
+    "model": "GIN",
+    "dataset": "WikiCS",
+
+    "out_dir": "out/WikiCS_node_classification/",
+
+    "params": {
+        "seed": 41,
+        "epochs": 1000,
+        "init_lr": 1e-2,
+        "lr_reduce_factor": 0.5,
+        "lr_schedule_patience": 25,
+        "min_lr": 1e-5,
+        "weight_decay": 5e-4,
+        "print_epoch_interval": 5,
+        "max_time": 24
+    },
+
+    "net_params": {
+        "L": 4,
+        "hidden_dim": 96,
+        "residual": true,
+        "readout": "sum",
+        "n_mlp_GIN": 2,
+        "learn_eps_GIN": true,
+        "neighbor_aggr_GIN": "sum",
+        "in_feat_dropout": 0.0,
+        "dropout": 0.35,
+        "batch_norm": true
+    }
+}
diff --git a/configs/WikiCS_node_classification_GatedGCN.json b/configs/WikiCS_node_classification_GatedGCN.json
@@ -0,0 +1,36 @@
+{
+    "gpu": {
+        "use": true,
+        "id": 0
+    },
+
+    "model": "GatedGCN",
+    "dataset": "WikiCS",
+
+    "out_dir": "out/WikiCS_node_classification/",
+
+    "params": {
+        "seed": 41,
+        "epochs": 1000,
+        "init_lr": 1e-2,
+        "lr_reduce_factor": 0.5,
+        "lr_schedule_patience": 25,
+        "min_lr": 1e-5,
+        "weight_decay": 5e-4,
+        "print_epoch_interval": 5,
+        "max_time": 24
+    },
+
+    "net_params": {
+        "L": 4,
+        "hidden_dim": 65,
+        "out_dim": 65,
+        "residual": true,
+        "readout": "mean",
+        "in_feat_dropout": 0.0,
+        "dropout": 0.35,
+        "batch_norm": true,
+        "self_loop": false,
+        "pos_enc": false
+    }
+}
diff --git a/configs/WikiCS_node_classification_GraphSage_100k.json b/configs/WikiCS_node_classification_GraphSage_100k.json
@@ -0,0 +1,35 @@
+{
+    "gpu": {
+        "use": true,
+        "id": 0
+    },
+
+    "model": "GraphSage",
+    "dataset": "WikiCS",
+
+    "out_dir": "out/WikiCS_node_classification/",
+
+    "params": {
+        "seed": 41,
+        "epochs": 1000,
+        "init_lr": 1e-2,
+        "lr_reduce_factor": 0.5,
+        "lr_schedule_patience": 25,
+        "min_lr": 1e-5,
+        "weight_decay": 5e-4,
+        "print_epoch_interval": 5,
+        "max_time": 24
+    },
+
+    "net_params": {
+        "L": 4,
+        "hidden_dim": 78,
+        "out_dim": 78,
+        "residual": true,
+        "readout": "mean",
+        "in_feat_dropout": 0.0,
+        "dropout": 0.35,
+        "batch_norm": true,
+        "sage_aggregator": "maxpool"
+    }
+}
diff --git a/configs/WikiCS_node_classification_MLP_100k.json b/configs/WikiCS_node_classification_MLP_100k.json
@@ -0,0 +1,33 @@
+{
+    "gpu": {
+        "use": true,
+        "id": 0
+    },
+
+    "model": "MLP",
+    "dataset": "WikiCS",
+
+    "out_dir": "out/WikiCS_node_classification/",
+
+    "params": {
+        "seed": 41,
+        "epochs": 1000,
+        "init_lr": 1e-2,
+        "lr_reduce_factor": 0.5,
+        "lr_schedule_patience": 25,
+        "min_lr": 1e-5,
+        "weight_decay": 5e-4,
+        "print_epoch_interval": 5,
+        "max_time": 24
+    },
+
+    "net_params": {
+        "L": 4,
+        "hidden_dim": 125,
+        "out_dim": 125,
+        "readout": "mean",
+        "gated": false,
+        "in_feat_dropout": 0.0,
+        "dropout": 0.35
+    }
+}
diff --git a/configs/WikiCS_node_classification_MoNet_100k.json b/configs/WikiCS_node_classification_MoNet_100k.json
@@ -0,0 +1,37 @@
+{
+    "gpu": {
+        "use": true,
+        "id": 0
+    },
+
+    "model": "MoNet",
+    "dataset": "WikiCS",
+
+    "out_dir": "out/WikiCS_node_classification/",
+
+    "params": {
+        "seed": 41,
+        "epochs": 1000,
+        "init_lr": 1e-2,
+        "lr_reduce_factor": 0.5,
+        "lr_schedule_patience": 25,
+        "min_lr": 1e-5,
+        "weight_decay": 5e-4,
+        "print_epoch_interval": 5,
+        "max_time": 24
+    },
+
+    "net_params": {
+        "L": 4,
+        "hidden_dim": 80,
+        "out_dim": 80,
+        "residual": true,
+        "readout": "mean",
+        "kernel": 3,
+        "pseudo_dim_MoNet": 2,
+        "in_feat_dropout": 0.0,
+        "dropout": 0.35,
+        "batch_norm": true,
+        "pos_enc": false
+    }
+}
diff --git a/configs/WikiCS_node_classification_MoNet_PE_100k.json b/configs/WikiCS_node_classification_MoNet_PE_100k.json
@@ -0,0 +1,38 @@
+{
+    "gpu": {
+        "use": true,
+        "id": 0
+    },
+
+    "model": "MoNet",
+    "dataset": "WikiCS",
+
+    "out_dir": "out/WikiCS_node_classification_PE/",
+
+    "params": {
+        "seed": 41,
+        "epochs": 1000,
+        "init_lr": 1e-2,
+        "lr_reduce_factor": 0.5,
+        "lr_schedule_patience": 25,
+        "min_lr": 1e-5,
+        "weight_decay": 5e-4,
+        "print_epoch_interval": 5,
+        "max_time": 24
+    },
+
+    "net_params": {
+        "L": 4,
+        "hidden_dim": 80,
+        "out_dim": 80,
+        "residual": true,
+        "readout": "mean",
+        "kernel": 3,
+        "pseudo_dim_MoNet": 2,
+        "in_feat_dropout": 0.0,
+        "dropout": 0.35,
+        "batch_norm": true,
+        "pos_enc": true,
+        "pos_enc_dim": 20
+    }
+}