williambrandler
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The Encyclopedia of Precision Medicine
Genome modeling and design across all domains of life
Flexible and efficient tests for evidence of positive selection anywhere in the cancer genome.
SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations only to parts for the genome (e.g., exome or a custom BED fil…
Python code to compute adatper content in reads, kmer content, per-base-GC content (at a specific position in a read alignment, against reference genome), per base NC content (at a specific positio…
A LaTeX class for books, reports or theses based on https://github.com/kenohori/thesis and https://github.com/Tufte-LaTeX/tufte-latex.
📄 Awesome CV is LaTeX template for your outstanding job application
(Legacy) Command Line Interface for Databricks
secondary analysis pipelines parallelized with apache spark
SeQuiLa: Distributed analytics for genomics based on Apache Spark!
Simulation of rare and common variants based on 1000 genomes data
Capture deep metrics on one or all assets within a Databricks workspace
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Cloud-native genomic dataframes and batch computing
Scalable gVCF merging and joint variant calling for population sequencing projects
A system for quickly generating training data with weak supervision
regenie is a C++ program for whole genome regression modelling of large genome-wide association studies.
A Javascript/d3 embeddable plugin for interactively visualizing statistical genetic data from customizable sources.
Structural variant and indel caller for mapped sequencing data
Official code repository for GATK versions 4 and up