DLOmix Resources

This repo contains example datasets and Jupyter notebooks for DLOmix, a deep learning library for Proteomics.

Experiment a simple retention time prediction use-case:

• using Google Colab   

Experiment a simple fragment ion intensity use-case:

• using Google Colab   

Folder Structure:

• example_datasets: Toy datasets including different splits for experimentation and performance evaluation for the following tasks:
  • example_datasets/RetentionTime: Retention Time prediction
  • example_datasets/Intensity: Intensity prediction
• notebooks: example Jupyter notebooks with walkthroughs and tasks using DLOmix.
  • notebooks/RetentionTime/tasks: notebooks explaining a retention time prediction task to do using the framework and based on the Retention Time Prediction notebook example
  • notebooks/Intensity/tasks: notebooks explaining an intensity prediction task to do using the framework and based on the Intensity Prediction notebook example
• slides: introductory slides used in workshops.