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Update JSON, SVG, PNG, TSV and GPML files
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actions-user committed Jan 3, 2024
1 parent e01c872 commit 9ab753b
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3 changes: 2 additions & 1 deletion pathways/WP4963/WP4963-datanodes.tsv
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Expand Up @@ -76,7 +76,8 @@ SERPINB5 GeneProduct ensembl:ENSG00000206075 "" ensembl:ENSG00000206075 ncbigene
CDKN1A GeneProduct ensembl:ENSG00000124762 "" ensembl:ENSG00000124762 ncbigene:1026 hgnc.symbol:CDKN1A uniprot:A0A024RCX5;uniprot:P38936
LIF GeneProduct ensembl:ENSG00000128342 "" ensembl:ENSG00000128342 ncbigene:3976 hgnc.symbol:LIF uniprot:P15018
MIR34A GeneProduct ensembl:ENSG00000284357 "" ensembl:ENSG00000284357 ncbigene:407040 hgnc.symbol:MIR34A
MIR34B/C GeneProduct ensembl:ENSG00000207811/ENSG00000207562 ""
MIR34B GeneProduct ensembl:ENSG00000207811 "" ensembl:ENSG00000207811 ncbigene:407041 hgnc.symbol:MIR34B
MIR34C GeneProduct ensembl:ENSG00000207562 "" ensembl:ENSG00000207562 ncbigene:407042 hgnc.symbol:MIR34C
MIR145 GeneProduct ensembl:ENSG00000276365 "" ensembl:ENSG00000276365 ncbigene:406937 hgnc.symbol:MIR145
NANOG GeneProduct ensembl:ENSG00000111704 "" ensembl:ENSG00000111704 ncbigene:79923 hgnc.symbol:NANOG uniprot:Q9H9S0;uniprot:F5GZI2
NOTCH1 GeneProduct ensembl:ENSG00000148400 "" ensembl:ENSG00000148400 ncbigene:4851 hgnc.symbol:NOTCH1 uniprot:A0A7P0TAK8;uniprot:A0A7P0TBG2;uniprot:A0A7P0T8U6;uniprot:A0A7P0T9V1;uniprot:A0A7P0TA56;uniprot:P46531;uniprot:A0A7P0TB20;uniprot:A0A7P0T8W1;uniprot:A0A7P0Z4H9
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28 changes: 16 additions & 12 deletions pathways/WP4963/WP4963.gpml
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@@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?>
<Pathway xmlns="http://pathvisio.org/GPML/2013a" Name="p53 transcriptional gene network" Data-Source="WikiPathways" Version="WP4963_r127853" Author="[Daisydx, Diazflorese, Egonw, AlexanderPico, Khanspers, Juliajohnsson, %(^]" Last-Modified="20240101073703" Organism="Homo sapiens">
<Pathway xmlns="http://pathvisio.org/GPML/2013a" Name="p53 transcriptional gene network" Data-Source="WikiPathways" Version="WP4963_r127862" Author="[Daisydx, Diazflorese, Egonw, AlexanderPico, Khanspers, Juliajohnsson, %(^]" Last-Modified="20240102225130" Organism="Homo sapiens">
<Comment Source="WikiPathways-description">The mechanisms underlying p53 tumor-suppressor function as gleaned from mouse models of genetic disruption to p53, its regulators and its targets (Kaiser 2017).</Comment>
<BiopaxRef>b0a</BiopaxRef>
<BiopaxRef>f59</BiopaxRef>
Expand Down Expand Up @@ -361,9 +361,13 @@
<Graphics CenterX="194.05036434735348" CenterY="663.0734708169078" Width="65.0" Height="25.499999999999982" ZOrder="32824" FontSize="12" Valign="Middle" />
<Xref Database="Ensembl" ID="ENSG00000284357" />
</DataNode>
<DataNode TextLabel="MIR34B/C" GraphId="b7b1f" Type="GeneProduct" GroupRef="c8715">
<DataNode TextLabel="MIR34B" GraphId="b7b1f" Type="GeneProduct" GroupRef="c8715">
<Graphics CenterX="194.05036434735348" CenterY="688.5734708169077" Width="65.0" Height="25.499999999999982" ZOrder="32825" FontSize="12" Valign="Middle" />
<Xref Database="Ensembl" ID="ENSG00000207811/ENSG00000207562" />
<Xref Database="Ensembl" ID="ENSG00000207811" />
</DataNode>
<DataNode TextLabel="MIR34C" GraphId="b7b1e" Type="GeneProduct" GroupRef="c8715">
<Graphics CenterX="194.05036434735348" CenterY="714.0734708" Width="65.0" Height="25.499999999999982" ZOrder="32826" FontSize="12" Valign="Middle" />
<Xref Database="Ensembl" ID="ENSG00000207562" />
</DataNode>
<DataNode TextLabel="MIR145" GraphId="cd83b" Type="GeneProduct">
<Graphics CenterX="105.30263294989447" CenterY="704.1628201030384" Width="65.0" Height="25.5" ZOrder="32826" FontSize="12" Valign="Middle" />
Expand Down Expand Up @@ -590,6 +594,15 @@
<bp:YEAR rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2020</bp:YEAR>
<bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Levine AJ</bp:AUTHORS>
</bp:PublicationXref>
<bp:PublicationXref xmlns:bp="http://www.biopax.org/release/biopax-level3.owl#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:id="f59">
<bp:ID rdf:datatype="http://www.w3.org/2001/XMLSchema#string">33932560</bp:ID>
<bp:DB rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PubMed</bp:DB>
<bp:TITLE rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Tumor suppressor p53: Biology, signaling pathways, and therapeutic targeting.</bp:TITLE>
<bp:SOURCE rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Biochim Biophys Acta Rev Cancer</bp:SOURCE>
<bp:YEAR rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2021</bp:YEAR>
<bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Hernández Borrero LJ</bp:AUTHORS>
<bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">El-Deiry WS</bp:AUTHORS>
</bp:PublicationXref>
<bp:PublicationXref xmlns:bp="http://www.biopax.org/release/biopax-level3.owl#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:id="b0a">
<bp:ID rdf:datatype="http://www.w3.org/2001/XMLSchema#string">29099489</bp:ID>
<bp:DB rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PubMed</bp:DB>
Expand All @@ -604,15 +617,6 @@
<bp:ID xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PW:0000718</bp:ID>
<bp:Ontology xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Pathway Ontology</bp:Ontology>
</bp:openControlledVocabulary>
<bp:PublicationXref xmlns:bp="http://www.biopax.org/release/biopax-level3.owl#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:id="f59">
<bp:ID rdf:datatype="http://www.w3.org/2001/XMLSchema#string">33932560</bp:ID>
<bp:DB rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PubMed</bp:DB>
<bp:TITLE rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Tumor suppressor p53: Biology, signaling pathways, and therapeutic targeting.</bp:TITLE>
<bp:SOURCE rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Biochim Biophys Acta Rev Cancer</bp:SOURCE>
<bp:YEAR rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2021</bp:YEAR>
<bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Hernández Borrero LJ</bp:AUTHORS>
<bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">El-Deiry WS</bp:AUTHORS>
</bp:PublicationXref>
</Biopax>
</Pathway>

70 changes: 61 additions & 9 deletions pathways/WP4963/WP4963.json
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Expand Up @@ -1313,6 +1313,50 @@
"y": 307.10526315789394,
"zIndex": 32784
},
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"drawAs": "rect",
"fill": "#ffffff",
"fontFamily": "Arial",
"fontSize": 12,
"fontStyle": "normal",
"fontWeight": "normal",
"gpmlElementName": "DataNode",
"height": 25.499999999999982,
"id": "b7b1e",
"isPartOf": "pvjsgeneratedidff7fe",
"kaavioType": "SingleFreeNode",
"lineHeight": 1.1,
"overflow": "hidden",
"padding": 8,
"stroke": "#000000",
"strokeWidth": 1,
"textAlign": "center",
"textContent": "MIR34C",
"textDecoration": "none",
"textOverflow": "clip",
"type": [
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"Ensembl:ENSG00000207562",
"GeneProduct",
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"Entrez Gene:407042",
"P351:407042",
"HGNC:MIR34C",
"MIR34C",
"P353:MIR34C",
"Wikidata:Q18058172"
],
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"width": 65,
"wpType": "GeneProduct",
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"xrefDataSource": "Ensembl",
"xrefIdentifier": "ENSG00000207562",
"y": 62.99999998309215,
"zIndex": 32826
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"fill": "#ffffff",
Expand All @@ -1331,22 +1375,29 @@
"stroke": "#000000",
"strokeWidth": 1,
"textAlign": "center",
"textContent": "MIR34B/C",
"textContent": "MIR34B",
"textDecoration": "none",
"textOverflow": "clip",
"type": [
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"Ensembl:ENSG00000207811/ENSG00000207562",
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],
"verticalAlign": "middle",
"whiteSpace": "pre",
"width": 65,
"wpType": "GeneProduct",
"x": 12,
"xrefDataSource": "Ensembl",
"xrefIdentifier": "ENSG00000207811/ENSG00000207562",
"xrefIdentifier": "ENSG00000207811",
"y": 37.499999999999886,
"zIndex": 32825
},
Expand Down Expand Up @@ -5785,15 +5836,16 @@
"pvjsgeneratedidff7fe": {
"contains": [
"c1334",
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"fontWeight": "bold",
"gpmlElementName": "Group",
"height": 74.99999999999989,
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"id": "pvjsgeneratedidff7fe",
"kaavioType": "Group",
"padding": 11,
Expand Down Expand Up @@ -6130,7 +6182,7 @@
"b655d",
"pvjsgeneratedidff800"
],
"dataSourceVersion": "WP4963_r127853",
"dataSourceVersion": "WP4963_r127862",
"displayName": "p53 transcriptional gene network",
"drawAs": "rect",
"fill": "white",
Expand All @@ -6140,7 +6192,7 @@
"height": 903.8329120487475,
"id": "WP4963",
"kaavioType": "Group",
"lastModified": "20240101073703",
"lastModified": "20240102225130",
"name": "p53 transcriptional gene network",
"organism": "Homo sapiens",
"padding": 5,
Expand All @@ -6149,7 +6201,7 @@
"stroke": "black",
"strokeWidth": 0,
"textAlign": "left",
"textContent": "Name: p53 transcriptional gene network\nLast Modified: 20240101073703\nOrganism: Homo sapiens",
"textContent": "Name: p53 transcriptional gene network\nLast Modified: 20240102225130\nOrganism: Homo sapiens",
"type": [
"Pathway",
"http://identifiers.org/pw/PW:0000718"
Expand Down
Binary file modified pathways/WP4963/WP4963.png
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18 changes: 12 additions & 6 deletions pathways/WP4963/WP4963.svg
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