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update docker network reference
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whtns committed Dec 7, 2023
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Expand Up @@ -2,15 +2,15 @@ These are the steps to set up a containerized (docker) version of our single cel

1. build the shinyapp docker image: `docker build -f Dockerfile.shinyapp --build-arg GITHUB_PAT=<your github personal access token> -t whtns/chevreul:latest .`

2. create a docker network called chevreul-net: `sudo docker network create chevreul-network`
2. create a docker network called chevreul-network: `sudo docker network create chevreul-network`

3. edit the application.yml file to refer to the appropriate docker images and containers
- id: seuratApp
container-cmd: ["R", "-e", "shiny::runApp('/root/dockerapp')"]
container-image: whtns/chevreul
access-groups: scientists
container-volumes: ["/dataVolume/storage/single_cell_projects/shinyproxy/dockerdata:/root/dockerdata"]
container-network: chevreul-net
container-network: chevreul-network

4. build the shinyproxy docker image `docker build -f Dockerfile.shinyproxy -t whtns/chevreul_container:latest .`

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