GitHub - wac/meshop: Source code for Generating Medical Subject Heading Over-Representation Profiles

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Source code for Generating Medical Subject Heading Over-Representation Profiles

www.dnahelix.org

ISC license

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Branches Tags

Name		Name	Last commit message	Last commit date
Latest commit History 166 Commits
direct_gd_predict		direct_gd_predict
gene_parse		gene_parse
mesh_parse		mesh_parse
profile_gd_predict		profile_gd_predict
pubmed_parse		pubmed_parse
sh		sh
sql		sql
txt		txt
util		util
ChangeLog		ChangeLog
LICENSE		LICENSE
Makefile		Makefile
README.top		README.top
config.default.mk		config.default.mk
startMake.sh		startMake.sh

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Quick Start

1. Unpack source files into directory (or clone the git repository)
2. Copy ./config.default.mk to ./config.mk
3. Edit ./config.mk to point to pubmed and Entrez files
4. Make a subdirectory ./tmp/ if it does not exist

Top level README file

List of directory contents
(WIP)

mesh_parse/	parse the NIH Medical Subject Heading XML files