Put all of API onto one page in docs, fix how we show crowsetta.examp…

…les.show and crowsetta.example

doc/api/index.md

@@ -8,22 +8,189 @@ This section documents the
 [API](https://en.wikipedia.org/wiki/API)
 of crowsetta.
 
-```{list-table}
-:widths: 30 70
+(api-core)=
 
-* - {ref}`Core <api-core>`
-  - The core data types, classes and modules of crowsetta
-* - {ref}`Interface <api-interface>`
-  - Defines an interface for classes that represent annotation formats
-* - {ref}`Formats <api-formats>`
-  - Modules with the classes representing annotation formats, 
-    and functions for conveniently accessing them.
+# Core
+
+This section documents the core API of crowsetta, 
+including data types, other classes, and modules.
+
+## Data types
+
+### Annotation
+
+```{eval-rst}
+.. autosummary::
+   :toctree: generated
+   :template: class.rst
+   
+   crowsetta.Annotation   
+```
+
+### Sequence
+
+```{eval-rst}
+.. autosummary::
+   :toctree: generated
+   :template: class.rst
+   
+   crowsetta.Sequence   
+```
+
+### Segment
+
+```{eval-rst}
+.. autosummary::
+   :toctree: generated
+   :template: class.rst
+   
+   crowsetta.Segment   
+```
+
+### BBox
+
+```{eval-rst}
+.. autosummary::
+   :toctree: generated
+   :template: class.rst
+   
+   crowsetta.BBox   
+```
+
+## Classes
+
+### Transcriber
+
+```{eval-rst}
+.. autosummary::
+   :toctree: generated
+   :template: class.rst
+   
+   crowsetta.Transcriber   
+```
+
+## Modules
+
+### `crowsetta.interface`
+
+For complete documentation of the interface, 
+please see {ref}`this page <api-interface>`.
+
+```{eval-rst}
+.. autosummary::
+   :toctree: generated
+   :template: module.rst
+   
+   crowsetta.interface   
 ```
 
-```{toctree}
-:hidden: true
 
-core
-interface
-formats
+### typing
+
+```{eval-rst}
+.. autosummary::
+   :toctree: generated
+   :template: module.rst
+   :recursive:
+
+   crowsetta.typing   
+```
+
+
+### validation
+
+```{eval-rst}
+.. autosummary::
+   :toctree: generated
+   :template: module.rst
+   :recursive:
+
+   crowsetta.validation   
+```
+
+## Decorators
+
+### `crowsetta.register_format`
+
+```{eval-rst}
+.. autosummary::
+   :toctree: generated
+   
+   crowsetta.register_format   
+```
+
+## Example data
+
+```{eval-rst}
+.. autosummary::
+   :toctree: generated
+   
+   crowsetta.example   
+   crowsetta.examples.show
+```
+
+(api-formats)=
+
+# Formats
+
+This section documents the API of the :mod:`crowsetta.formats` module.
+It is generated automatically. 
+If you are a crowsetta user looking for 
+more detail about the built-in formats,
+please see: {ref}`formats-index`.
+
+```{eval-rst}
+.. autosummary::
+   :toctree: generated
+   :template: module.rst
+   :recursive:
+
+   crowsetta.formats
+   crowsetta.formats.bbox
+   crowsetta.formats.seq
+```
+
+(api-interface)=
+
+# Interface
+
+The section documents the API of the :mod:`crowsetta.interface` module.
+
+```{eval-rst}
+.. autosummary::
+   :toctree: generated
+   :template: module.rst
+   :recursive:
+
+   crowsetta.interface
+```
+
+## Base
+
+```{eval-rst}
+.. autosummary::
+   :toctree: generated
+   :template: class.rst
+
+   crowsetta.interface.base.BaseFormat
+```
+
+## Sequence-Like
+
+```{eval-rst}
+.. autosummary::
+   :toctree: generated
+   :template: class.rst
+
+   crowsetta.interface.seq.SeqLike
+```
+
+## Bounding Box-Like
+
+```{eval-rst}
+.. autosummary::
+   :toctree: generated
+   :template: class.rst
+
+   crowsetta.interface.bbox.BBoxLike
 ```