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feat: support jobs without rights field
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* Support jobs without `rights` field.
* Prevent error related to forward ref.
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igboyes authored Jun 12, 2024
1 parent 677e661 commit 3b5830f
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Showing 4 changed files with 42 additions and 168 deletions.
2 changes: 1 addition & 1 deletion .devcontainer/Dockerfile
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Expand Up @@ -16,7 +16,7 @@ RUN wget https://zlib.net/pigz/pigz-2.8.tar.gz && \
cd pigz-2.8 && \
make

FROM python:3.12-bookworm
FROM python:3.12.3-bookworm
COPY --from=bowtie2 /build/bowtie2/* /usr/local/bin/
COPY --from=ghcr.io/virtool/workflow-tools:2.0.1 /opt/fastqc /opt/fastqc
COPY --from=ghcr.io/virtool/workflow-tools:2.0.1 /opt/hmmer /opt/hmmer
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4 changes: 2 additions & 2 deletions Dockerfile
Original file line number Diff line number Diff line change
Expand Up @@ -16,7 +16,7 @@ RUN wget https://zlib.net/pigz/pigz-2.8.tar.gz && \
cd pigz-2.8 && \
make

FROM python:3.12-bookworm as deps
FROM python:3.12.3-bookworm as deps
WORKDIR /app
COPY --from=bowtie2 /build/bowtie2/* /usr/local/bin/
COPY --from=ghcr.io/virtool/workflow-tools:2.0.1 /opt/fastqc /opt/fastqc
Expand All @@ -27,7 +27,7 @@ RUN apt-get update && \
rm -rf /var/lib/apt/lists/* && \
apt-get clean

FROM python:3.12-bookworm as poetry
FROM python:3.12.3-bookworm as poetry
WORKDIR /app
RUN curl --proto '=https' --tlsv1.2 -sSf https://sh.rustup.rs | sh -s -- -y
RUN curl -sSL https://install.python-poetry.org | python -
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