refactor: simplify ncbi models #337
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name: ci | |
on: | |
pull_request: | |
branches: [main, alpha] | |
push: | |
branches: [main, alpha] | |
jobs: | |
commitlint: | |
runs-on: ubuntu-22.04 | |
steps: | |
- name: Checkout | |
uses: actions/checkout@v4 | |
with: | |
fetch-depth: 0 | |
- name: Commitlint | |
uses: wagoid/commitlint-github-action@v5 | |
test: | |
runs-on: ubuntu-22.04 | |
steps: | |
- name: Checkout | |
uses: actions/checkout@v4 | |
- name: Setup Python | |
uses: actions/setup-python@v5 | |
with: | |
python-version: "3.12" | |
- name: Install Poetry | |
uses: snok/install-poetry@v1 | |
- name: Install packages | |
run: poetry install | |
- name: Run unit tests | |
run: poetry run pytest -m "not ncbi" --disable-socket --allow-unix-socket | |
- name: Check if NCBI auth is present, fail out if missing | |
env: | |
super_secret: ${{ secrets.NCBI_API_KEY }} | |
if: ${{ env.super_secret == '' }} | |
run: | | |
echo "NCBI authentication not provided. Failing out." | |
exit 1 | |
- name: Run NCBI-dependent tests | |
run: poetry run pytest -m "ncbi" | |
env: | |
NCBI_API_KEY: ${{ secrets.NCBI_API_KEY }} | |
NCBI_EMAIL: ${{ secrets.NCBI_EMAIL }} | |
release: | |
if: github.event_name == 'push' | |
needs: | |
- commitlint | |
- test | |
runs-on: ubuntu-22.04 | |
steps: | |
- name: Checkout | |
uses: actions/checkout@v4 | |
- name: Setup NodeJS | |
uses: actions/setup-node@v4 | |
with: | |
node-version: 20 | |
- name: Install semantic-release | |
run: npm i semantic-release@v23.0.0 conventional-changelog-conventionalcommits@7.0.2 | |
- name: Release | |
env: | |
GITHUB_USERNAME: ${{ secrets.GH_USERNAME }} | |
GITHUB_TOKEN: ${{ secrets.GH_TOKEN }} | |
run: npx semantic-release |