This repository has been archived by the owner on Nov 25, 2023. It is now read-only.
v0.2.0 - Color schemes for plots and 5' and 3' read counts
riboplot
- Support for color schemes - options: default, colorbrewer, rgb, greyorfs.
- Plot changes - colored, light background for ORF architecture, legend moved down.
- Image DPI change 300 -> 600.
- Sample scripts to plot multiple transcripts and multiple color schemes.
ribocount
- Ability to output read counts in 5'(
-v
) and 3'(-r
) regions.
Bugfixes
- Report error if a bam index could not be generated (ex. bam sorted using
reference names instead of chromosome coordinates). - No start/stop values when transcript sequences are in lower case.
Tests
- Split into three different files.
- Updated test configuration.
Minor
- XML wrapper changes - remove 'leader', add help text and output label change [ribocount].
- Remove unused pysam import [riboplot].
- Replace doc includes with sym links (breaks Galaxy toolshed otherwise).
- Updated CSS/Table styles (removed number column from table).
- y limit is now 1.25x [riboplot].
- Removed line width on bars [riboplot].