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Commits on Jul 5, 2022

• Update q2view_display.loc.sample

  

  blankenberg

  authored and

  ebolyen

  committed
  9091acc

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• Add q2view display application.

  

  blankenberg

  authored and

  ebolyen

  committed
  797d63a

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Commits on Nov 9, 2020

• Remove redundant default build

  

  Nolan Woods

  committed
  b7e1238

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Commits on Jul 17, 2019

• Add GEDA for iCn3D

  blankenberg

  committed
  dfb5a98

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Commits on Feb 4, 2019

• Remove errant space in intermine_simple_display.loc.sample

  blankenberg

  committed
  428c663

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Commits on Aug 22, 2018

• Update UCSC builds

  nsoranzo

  committed
  926f0ab

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Commits on Jul 6, 2018

• add missing intermine_simple_display.loc.sample

  blankenberg

  committed
  58c68d4

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Commits on Apr 7, 2017

• remove obsolete line

  bgruening

  authored
  cac9c98

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Commits on Apr 5, 2017

• synchronise against latest UCSC versions

  bgruening

  committed
  ab1f7ea

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Commits on Nov 4, 2016

• BLAST database *.loc.sample files

  peterjc

  committed
  2956f94

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Commits on Jul 27, 2016

• Add hg38 to main for ucsc_build_sites.txt.sample

  blankenberg

  committed
  04b7d11

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Commits on Apr 1, 2016

• Add Phinch as an external display application. Currently linking to a personal copy of Phinch, since it requires PitchInteractiveInc/Phinch#54

  blankenberg

  committed
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Commits on Mar 15, 2016

• typo

  blankenberg

  committed
  e6bb45b

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• Add vcf.iobio as a display application.

  blankenberg

  committed
  0c57453

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• Add bam.iobio as a display application.

  blankenberg

  committed
  46728c5

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Commits on Sep 24, 2015

• Merge pull request galaxyproject#612 from lparsons/manual_builds

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  dannon

  committed
  7f3ee5b

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Commits on Aug 18, 2015

• Move manual_builds.txt to manual_builds.txt.sample to allow for customization

  lparsons

  committed
  5810a85

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• Remove fastx_clipper_sequences.txt, moved to toolshed

  lparsons

  committed
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Commits on Aug 11, 2015

• Per @yhoogstrate's suggestion galaxyproject@c0c286a#commitcomment-12594774, retab .loc.samples

  dannon

  committed
  ee4f077

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Commits on May 20, 2015

• Update modencode dbkeys in gbrowse_build_sites.txt

  blankenberg

  committed
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Commits on Mar 26, 2015

• Re-enable IGV local external display application by default. Add hg38 as available genome. We should probably update this view to either allow any genome or to function like the current web_link_main.

  blankenberg

  committed
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Commits on Feb 27, 2015

• Have IGV external display application load a set of links for available genomes via a tool data table that reads a URL (http://igv.broadinstitute.org/genomes/genomes.txt). The manually specified bu…

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  blankenberg

  committed
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Commits on Feb 11, 2015

• Comment out igv local external display application link by default, since it is confusing users (most do not have a local igv running).

  blankenberg

  committed
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Commits on Dec 10, 2014

• Removed blastdb_p.loc.sample, moved to tool-shed repo

  lparsons

  committed
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Commits on Jul 27, 2014

• Remove additional pieces from old genome index system.

  natefoo

  committed
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Commits on May 19, 2014

• Migrate 22 tools from the distribution to the tool shed.

  davebx

  committed
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Commits on Apr 1, 2014

• Migrate 46 tools from the distribution to the tool shed: gatk, gops, regional variation.

  davebx

  committed
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Commits on Feb 27, 2014

• Rename ucsc_build_sites.txt to .sample.

  natefoo

  committed
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Commits on Jan 27, 2014

• Remove broken and/or obsolete tools.

  natefoo

  committed
  9c64fc1

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• Migrate 43 tools from the distribution to the tool shed.

  davebx

  committed
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Commits on Oct 7, 2013

• backout -r 10811

  fubar2

  committed
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• backout -r 10802

  fubar2

  committed
  66b690d

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Commits on Oct 6, 2013

• updated ucsc builds

  fubar2

  committed
  59bd638

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Commits on Oct 4, 2013

• branch merge

  fubar2

  committed
  87b1203

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Commits on Oct 1, 2013

• Remove sam_fa_indices.loc.sample from tool-data. Update migration xml to the correct revisions of cufflinks repositories.

  davebx

  committed
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