Version 0.9.3 missing BioVcf::VCFfile

[delongGao]

Hi,

Thanks for this great gem! I think I have encountered some issue while trying to use it as API.

Version: 0.9.3, and 0.9.2 from rubygems

Ruby version: 2.5.1

Issue:

I want to use the BioVcf::VCFfile wrapper via the API, after installing the gem, I did:

=> BioVcf::VCFfile.new(file_path)

as the readme suggested, but got the following error:
NameError (uninitialized constant BioVcf::VCFfile)

What I expect:

I should be able to access the constant as the readme showed.

Note:

• I did check out the lib/bio-vcf.rb file in master, it seems we didn't require the vcffile.rb file there.
• please let me know if there is anything else you would need to resolve the issue
• I would be happy to open a PR if I could help. Thank you!

[pjotrp]

You probably need to update the include path.

[delongGao]

Hi @pjotrp,

Thanks for your reply. However, I'm a little confused about what you mean by include path. And to give a little more information. I'm trying to use this gem in rails. In which case, the inclusion of gems is handled by rails via bundler and Gemfile. As a result, I cannot just easily access vcffile.rb by require 'lib/vcffile' myself without doing monkey patching. And it seems odd to me that this require is not in the lib/bio-vcf.rb file in the first place. Thank you!

Best,
Delong

[pjotrp]

If you have a fix, feel free to send a PR!