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Bowtie2 index step may appear stuck with high thread counts on WSL2; completes quickly with fewer threads

Status: Open.

#262 In vanheeringen-lab/genomepy;

· YangZiChen-glitch opened on Dec 17, 2025

requests.exceptions.ChunkedEncodingError

Status: Open.

#258 In vanheeringen-lab/genomepy;

· nick-youngblut opened on Apr 4, 2025

SSL Error Downloading Genome

Status: Open.

#247 In vanheeringen-lab/genomepy;

· sojichld opened on Jul 9, 2024

Add proxy support

Status: Open.

#246 In vanheeringen-lab/genomepy;

· Mitmischer opened on Mar 15, 2024

Genomepy install gets stuck

Status: Open.

#245 In vanheeringen-lab/genomepy;

· DavideBrex opened on Jan 18, 2024

does not load gtf with chromose information

Status: Open.

#244 In vanheeringen-lab/genomepy;

· antonkulaga opened on Sep 5, 2023

cannot install genomepy with conda on arm64 Mac OS X

Status: Open.

#221 In vanheeringen-lab/genomepy;

· ctb opened on Sep 28, 2022

Issue with gtfToGenePred

Status: Open.

#217 In vanheeringen-lab/genomepy;

· simonvh opened on Aug 5, 2022

details of external databases

Status: Open.

#200 In vanheeringen-lab/genomepy;

· zhichengwang59 opened on Mar 18, 2022

Network Error

Status: Open.

#192 In vanheeringen-lab/genomepy;

· ChaoXu1997 opened on Dec 2, 2021

Using Rich for better terminal output

Status: Open.

#189 In vanheeringen-lab/genomepy;

· Mr-Milk opened on Nov 10, 2021

Add a citation file.

enhancement

minor

Status: Open.

#177 In vanheeringen-lab/genomepy;

· simonvh opened on Jul 28, 2021