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| --- | ||
| site: freiburg | ||
| tags: [tools] | ||
| title: UseGalaxy.eu Tool Updates for 2023-11-19 | ||
| supporters: | ||
| - denbi | ||
| - elixir | ||
| --- | ||
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| On 2023-11-19, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in [Jenkins Build #418](https://build.galaxyproject.eu/job/usegalaxy-eu/job/install-tools/#418/) | ||
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| ## Data and Metadata Management | ||
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| - eml2eal was updated to [248b03f124dd](https://toolshed.g2.bx.psu.edu/view/ecology/eml2eal/248b03f124dd) | ||
| - makeeml was updated to [9d56f6480194](https://toolshed.g2.bx.psu.edu/view/ecology/makeeml/9d56f6480194) | ||
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| ## QIIME 2 | ||
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| - qiime2__deblur__denoise_16S was updated to [2572fc0f88f2](https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__deblur__denoise_16S/2572fc0f88f2) | ||
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| ## Get Data | ||
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| - sra_tools was updated to [e407b9da183a](https://toolshed.g2.bx.psu.edu/view/iuc/sra_tools/e407b9da183a) | ||
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| ## Proteomics | ||
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| - openms_openpepxl was updated to [40cc19c0dbd6](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_openpepxl/40cc19c0dbd6) | ||
| - openms_openpepxl was updated to [a2a842b00f9c](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_openpepxl/a2a842b00f9c) | ||
| - openms_openpepxl was updated to [fc36cfd19834](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_openpepxl/fc36cfd19834) | ||
| - openms_percolatoradapter was updated to [0fc9ae55bcfc](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_percolatoradapter/0fc9ae55bcfc) | ||
| - openms_percolatoradapter was updated to [e7881a82b56d](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_percolatoradapter/e7881a82b56d) | ||
| - openms_xfdr was updated to [81402a5e4173](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_xfdr/81402a5e4173) | ||
| - openms_xfdr was updated to [9a6e3bb0f358](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_xfdr/9a6e3bb0f358) | ||
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| ## Imaging | ||
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| - 2d_filter_segmentation_by_features was updated to [6ad1d3cfdea1](https://toolshed.g2.bx.psu.edu/view/imgteam/2d_filter_segmentation_by_features/6ad1d3cfdea1) | ||
| - 2d_histogram_equalization was updated to [77f7159d775a](https://toolshed.g2.bx.psu.edu/view/imgteam/2d_histogram_equalization/77f7159d775a) | ||
| - anisotropic_diffusion was updated to [e6987afa0484](https://toolshed.g2.bx.psu.edu/view/imgteam/anisotropic_diffusion/e6987afa0484) | ||
| - binary2labelimage was updated to [984358e43242](https://toolshed.g2.bx.psu.edu/view/imgteam/binary2labelimage/984358e43242) | ||
| - binary2labelimage was updated to [9bb446db4a1e](https://toolshed.g2.bx.psu.edu/view/imgteam/binary2labelimage/9bb446db4a1e) | ||
| - binaryimage2points was updated to [f38f42d55813](https://toolshed.g2.bx.psu.edu/view/imgteam/binaryimage2points/f38f42d55813) | ||
| - bioformats2raw was updated to [4b6c2135e547](https://toolshed.g2.bx.psu.edu/view/imgteam/bioformats2raw/4b6c2135e547) | ||
| - color_deconvolution was updated to [612aa1478fe1](https://toolshed.g2.bx.psu.edu/view/imgteam/color_deconvolution/612aa1478fe1) | ||
| - concat_channels was updated to [212627bfb759](https://toolshed.g2.bx.psu.edu/view/imgteam/concat_channels/212627bfb759) | ||
| - coordinates_of_roi was updated to [00175f4a2bbb](https://toolshed.g2.bx.psu.edu/view/imgteam/coordinates_of_roi/00175f4a2bbb) | ||
| - count_objects was updated to [b58447a2eed2](https://toolshed.g2.bx.psu.edu/view/imgteam/count_objects/b58447a2eed2) | ||
| - curve_fitting was updated to [2dc244356765](https://toolshed.g2.bx.psu.edu/view/imgteam/curve_fitting/2dc244356765) | ||
| - detection_viz was updated to [99433164b593](https://toolshed.g2.bx.psu.edu/view/imgteam/detection_viz/99433164b593) | ||
| - image_registration_affine was updated to [5030651c2993](https://toolshed.g2.bx.psu.edu/view/imgteam/image_registration_affine/5030651c2993) | ||
| - imagecoordinates_flipaxis was updated to [984b342d03a6](https://toolshed.g2.bx.psu.edu/view/imgteam/imagecoordinates_flipaxis/984b342d03a6) | ||
| - labelimage2points was updated to [3b7460735223](https://toolshed.g2.bx.psu.edu/view/imgteam/labelimage2points/3b7460735223) | ||
| - landmark_registration was updated to [02aa2873e67d](https://toolshed.g2.bx.psu.edu/view/imgteam/landmark_registration/02aa2873e67d) | ||
| - mergeneighboursinlabelimage was updated to [9cbddb13fb9e](https://toolshed.g2.bx.psu.edu/view/imgteam/mergeneighboursinlabelimage/9cbddb13fb9e) | ||
| - overlay_images was updated to [37662cbf44b8](https://toolshed.g2.bx.psu.edu/view/imgteam/overlay_images/37662cbf44b8) | ||
| - permutate_axis was updated to [7e7215e721af](https://toolshed.g2.bx.psu.edu/view/imgteam/permutate_axis/7e7215e721af) | ||
| - points2binaryimage was updated to [90385ec28b34](https://toolshed.g2.bx.psu.edu/view/imgteam/points2binaryimage/90385ec28b34) | ||
| - points2labelimage was updated to [30ca5d5d03ec](https://toolshed.g2.bx.psu.edu/view/imgteam/points2labelimage/30ca5d5d03ec) | ||
| - points_association_nn was updated to [f3fad67af22c](https://toolshed.g2.bx.psu.edu/view/imgteam/points_association_nn/f3fad67af22c) | ||
| - projective_transformation was updated to [f5744f0e5a81](https://toolshed.g2.bx.psu.edu/view/imgteam/projective_transformation/f5744f0e5a81) | ||
| - projective_transformation_points was updated to [65e95d0b8838](https://toolshed.g2.bx.psu.edu/view/imgteam/projective_transformation_points/65e95d0b8838) | ||
| - rfove was updated to [d10a46ef77d3](https://toolshed.g2.bx.psu.edu/view/imgteam/rfove/d10a46ef77d3) | ||
| - segmetrics was updated to [462f49860277](https://toolshed.g2.bx.psu.edu/view/imgteam/segmetrics/462f49860277) | ||
| - segmetrics was updated to [ac55e2f4d9e3](https://toolshed.g2.bx.psu.edu/view/imgteam/segmetrics/ac55e2f4d9e3) | ||
| - segmetrics was updated to [b6e88e7bf2fa](https://toolshed.g2.bx.psu.edu/view/imgteam/segmetrics/b6e88e7bf2fa) | ||
| - slice_image was updated to [f312d414f234](https://toolshed.g2.bx.psu.edu/view/imgteam/slice_image/f312d414f234) | ||
| - split_labelmap was updated to [9db1c22dbe17](https://toolshed.g2.bx.psu.edu/view/imgteam/split_labelmap/9db1c22dbe17) | ||
| - spot_detection_2d was updated to [14f9986800fa](https://toolshed.g2.bx.psu.edu/view/imgteam/spot_detection_2d/14f9986800fa) | ||
| - superdsm was updated to [244f67290d28](https://toolshed.g2.bx.psu.edu/view/imgteam/superdsm/244f67290d28) | ||
| - superdsm was updated to [7fd8dba15bd3](https://toolshed.g2.bx.psu.edu/view/imgteam/superdsm/7fd8dba15bd3) | ||
| - wsi_extract_top_view was updated to [3bd767eee603](https://toolshed.g2.bx.psu.edu/view/imgteam/wsi_extract_top_view/3bd767eee603) | ||
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| ## HiCExplorer | ||
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| - hicexplorer_hicplotsvl was updated to [81d061c9276d](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hicplotsvl/81d061c9276d) | ||
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| ## Phylogenetics | ||
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| - hyphy_prime was updated to [4072360120e4](https://toolshed.g2.bx.psu.edu/view/iuc/hyphy_prime/4072360120e4) | ||
| - raxml was updated to [b1e68bbe4cef](https://toolshed.g2.bx.psu.edu/view/iuc/raxml/b1e68bbe4cef) | ||
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| ## Single-cell | ||
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| - scanpy_cluster_reduce_dimension was updated to [6acb08931836](https://toolshed.g2.bx.psu.edu/view/iuc/scanpy_cluster_reduce_dimension/6acb08931836) | ||
| - scanpy_filter was updated to [a03ff8633507](https://toolshed.g2.bx.psu.edu/view/iuc/scanpy_filter/a03ff8633507) | ||
| - scanpy_inspect was updated to [3081ff5c84a3](https://toolshed.g2.bx.psu.edu/view/iuc/scanpy_inspect/3081ff5c84a3) | ||
| - scanpy_normalize was updated to [94c19fb1281c](https://toolshed.g2.bx.psu.edu/view/iuc/scanpy_normalize/94c19fb1281c) | ||
| - scanpy_plot was updated to [9b0cdb8cf6be](https://toolshed.g2.bx.psu.edu/view/iuc/scanpy_plot/9b0cdb8cf6be) | ||
| - scanpy_remove_confounders was updated to [458e8f43a775](https://toolshed.g2.bx.psu.edu/view/iuc/scanpy_remove_confounders/458e8f43a775) | ||
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| ## None | ||
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| - data_manager_diamond_database_builder was updated to [4a08b7b76b78](https://toolshed.g2.bx.psu.edu/view/iuc/data_manager_diamond_database_builder/4a08b7b76b78) | ||
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| ## hca_sc_label_analysis_tools | ||
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| - decoupler_pseudobulk was updated to [130e25d3ce92](https://toolshed.g2.bx.psu.edu/view/ebi-gxa/decoupler_pseudobulk/130e25d3ce92) | ||
| - decoupler_pseudobulk was updated to [f321c60167d4](https://toolshed.g2.bx.psu.edu/view/ebi-gxa/decoupler_pseudobulk/f321c60167d4) | ||
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| ## Annotation | ||
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| - genenotebook_genenotebook_build was updated to [12494257f0f0](https://toolshed.g2.bx.psu.edu/view/gga/genenotebook_genenotebook_build/12494257f0f0) | ||
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