Autoupdate tool blog post

_posts/2024-04-14-tool-update.md

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+---
+site: freiburg
+tags: [tools]
+title: UseGalaxy.eu Tool Updates for 2024-04-14
+supporters:
+- denbi
+- elixir
+---
+
+On 2024-04-14, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in [Jenkins Build #440](https://build.galaxyproject.eu/job/usegalaxy-eu/job/install-tools/#440/)
+
+
+## GIS Data Handling
+
+- otb_band_math was updated to [d266345e510d](https://toolshed.g2.bx.psu.edu/view/ecology/otb_band_math/d266345e510d)
+- otb_mean_shift_smoothing was updated to [dd397752ad21](https://toolshed.g2.bx.psu.edu/view/ecology/otb_mean_shift_smoothing/dd397752ad21)
+
+## Get Data
+
+- iabiodiv_smartbiodiv_med_environ was updated to [ca00b2eabdf3](https://toolshed.g2.bx.psu.edu/view/ecology/iabiodiv_smartbiodiv_med_environ/ca00b2eabdf3)
+
+## QIIME 2
+
+- qiime2__deblur__denoise_16S was updated to [2572fc0f88f2](https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__deblur__denoise_16S/2572fc0f88f2)
+- qiime2__deblur__denoise_16S was updated to [b883cbea5623](https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__deblur__denoise_16S/b883cbea5623)
+
+## Proteomics
+
+- openms_openpepxl was updated to [a2a842b00f9c](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_openpepxl/a2a842b00f9c)
+- openms_percolatoradapter was updated to [0fc9ae55bcfc](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_percolatoradapter/0fc9ae55bcfc)
+- openms_percolatoradapter was updated to [e7881a82b56d](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_percolatoradapter/e7881a82b56d)
+- openms_xfdr was updated to [81402a5e4173](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_xfdr/81402a5e4173)
+- openms_xfdr was updated to [9a6e3bb0f358](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_xfdr/9a6e3bb0f358)
+- qupath_roi_splitter was updated to [7bee859bbd11](https://toolshed.g2.bx.psu.edu/view/galaxyp/qupath_roi_splitter/7bee859bbd11)
+
+## Metabolomics
+
+- sirius_csifingerid was updated to [9e6bf7278257](https://toolshed.g2.bx.psu.edu/view/computational-metabolomics/sirius_csifingerid/9e6bf7278257)
+
+## Annotation
+
+- chewbbaca_allelecall was updated to [9de4eeb0023b](https://toolshed.g2.bx.psu.edu/view/iuc/chewbbaca_allelecall/9de4eeb0023b)
+- chewbbaca_allelecallevaluator was updated to [77a84fa4a02b](https://toolshed.g2.bx.psu.edu/view/iuc/chewbbaca_allelecallevaluator/77a84fa4a02b)
+- chewbbaca_createschema was updated to [4e61ec4fd5f5](https://toolshed.g2.bx.psu.edu/view/iuc/chewbbaca_createschema/4e61ec4fd5f5)
+- chewbbaca_downloadschema was updated to [18d7d8582206](https://toolshed.g2.bx.psu.edu/view/iuc/chewbbaca_downloadschema/18d7d8582206)
+- chewbbaca_extractcgmlst was updated to [743125c3ac12](https://toolshed.g2.bx.psu.edu/view/iuc/chewbbaca_extractcgmlst/743125c3ac12)
+- chewbbaca_joinprofiles was updated to [a370301694bc](https://toolshed.g2.bx.psu.edu/view/iuc/chewbbaca_joinprofiles/a370301694bc)
+- chewbbaca_nsstats was updated to [ebbbb3265867](https://toolshed.g2.bx.psu.edu/view/iuc/chewbbaca_nsstats/ebbbb3265867)
+- chewbbaca_prepexternalschema was updated to [6f7cfce9494d](https://toolshed.g2.bx.psu.edu/view/iuc/chewbbaca_prepexternalschema/6f7cfce9494d)
+
+## Assembly
+
+- merqury was updated to [eb7b00ec347d](https://toolshed.g2.bx.psu.edu/view/iuc/merqury/eb7b00ec347d)
+- pairtools_parse was updated to [26ed6ceeeec1](https://toolshed.g2.bx.psu.edu/view/iuc/pairtools_parse/26ed6ceeeec1)
+
+## Evolution
+
+- iqtree was updated to [24d024316465](https://toolshed.g2.bx.psu.edu/view/iuc/iqtree/24d024316465)
+
+## FASTA/FASTQ
+
+- bbtools_bbduk was updated to [1c427e24fb79](https://toolshed.g2.bx.psu.edu/view/iuc/bbtools_bbduk/1c427e24fb79)
+- bbtools_bbmerge was updated to [82ced0e47b9d](https://toolshed.g2.bx.psu.edu/view/iuc/bbtools_bbmerge/82ced0e47b9d)
+- bbtools_tadpole was updated to [eaeb387d1244](https://toolshed.g2.bx.psu.edu/view/iuc/bbtools_tadpole/eaeb387d1244)
+
+## Mapping
+
+- bbtools_bbmap was updated to [b394de3cf6e8](https://toolshed.g2.bx.psu.edu/view/iuc/bbtools_bbmap/b394de3cf6e8)
+
+## Metagenomic Analysis
+
+- bigscape was updated to [353b2de0eabf](https://toolshed.g2.bx.psu.edu/view/iuc/bigscape/353b2de0eabf)
+- seqsero2 was updated to [e95aceb0e32c](https://toolshed.g2.bx.psu.edu/view/iuc/seqsero2/e95aceb0e32c)
+
+## Nanopore
+
+- nanoplot was updated to [a02b8b3f5a0c](https://toolshed.g2.bx.psu.edu/view/iuc/nanoplot/a02b8b3f5a0c)
+
+## Phylogenetics
+
+- hyphy_prime was updated to [4072360120e4](https://toolshed.g2.bx.psu.edu/view/iuc/hyphy_prime/4072360120e4)
+
+## RNA Analysis
+
+- kallisto_pseudo was updated to [2953303df011](https://toolshed.g2.bx.psu.edu/view/iuc/kallisto_pseudo/2953303df011)
+- rseqc was updated to [27e16a30667a](https://toolshed.g2.bx.psu.edu/view/nilesh/rseqc/27e16a30667a)
+
+## Variant Calling
+
+- bbtools_callvariants was updated to [f36a69c3729a](https://toolshed.g2.bx.psu.edu/view/iuc/bbtools_callvariants/f36a69c3729a)
+
+## None
+
+- data_manager_diamond_database_builder was updated to [4a08b7b76b78](https://toolshed.g2.bx.psu.edu/view/iuc/data_manager_diamond_database_builder/4a08b7b76b78)
+