I work at the intersection of bioinformatics, data science, and Artificial Intelligence to analyze complex biological systems. My work focuses on genomics, transcriptomics, RNA-seq analysis, and scalable pipeline development, combining programming, statistics, and HPC computing to uncover biological insights.
- 🎓 MS Bioinformatics — Northeastern University (Boston, MA)
- 🔬 Focus: RNA-seq analysis, variant calling, single-cell genomics
- 💻 Building containerized bioinformatics pipelines with Nextflow DSL2
- 🖥️ Experience running workflows on HPC clusters (SLURM)
- 🌱 Currently sharpening: Nextflow, Docker/Singularity, DESeq2, scRNA-seq
Languages: Python | R | Bash
Pipeline Tools: Nextflow DSL2 | GATK | SLURM
Containers: Docker | Singularity
Genomics: HISAT2 | STAR | featureCounts | DESeq2 | Seurat | FastQC | fastp
Other: Git | Linux | HPC
🔬 RNA-seq Nextflow Pipeline
Modular, containerized RNA-seq pipeline built with Nextflow DSL2.
FastQC → fastp → HISAT2 → featureCounts → MultiQC
Runs locally with Docker and scales to HPC with Singularity + SLURM.
