Description
The old version of the EMIT workflow is here:
http://awslbdockstorestack-lb-1429770210.us-west-2.elb.amazonaws.com:9998/api/ga4gh/trs/v2/tools/%23workflow%2Fdockstore.org%2FGodwinShen%2Femit-ghg/versions/9/plain-CWL/descriptor/workflow.cwl
and the parameter files for executing in unity-venue-dev and unity-venue-test are:
https://raw.githubusercontent.com/GodwinShen/emit-ghg/refs/heads/main/test/emit-ghg-dev.json
https://raw.githubusercontent.com/GodwinShen/emit-ghg/refs/heads/main/test/emit-ghg-test.json
This task involves updating the EMIT workflow to follow the new stage-in / process / stage-out design. The Docker container that executes processing:
godwinshen/emit-ghg:bc61e769
will probably have to be updated as well.
Please work with @ngachung and @brianlee731 for help with the Data Services functionality and overall EMIT design.
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