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AWS for Bioinformatics Researchers
A vagrant project with an ubuntu box with the tools needed to do DevOps
Config files used to define parameters specific to compute environments at different Institutions
An accurate and ultra-fast adapter and quality trimming program for Illumina Next-Generation Sequencing (NGS) data.
RNA-seq workflow using STAR and DESeq2
This Snakemake pipeline implements the GATK best-practices workflow
Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.
A complete guide for analyzing bulk RNA-seq data. Go from raw FASTQ files to mapping reads using STAR and differential gene expression analysis using DESeq2, using example data from Guo et al. 2019.
12 weeks, 26 lessons, 52 quizzes, classic Machine Learning for all
A platform to create documentation/wiki content built with PHP & Laravel
Generation of diagrams like flowcharts or sequence diagrams from text in a similar manner as markdown
Minimal and clean examples of machine learning algorithms implementations
This repository is for the GitHub Actions 101 workshop that is taking place on the 22nd of November 2023. The repository should be forked by attendees who wish to code as they go during the workshop.
The Incredible PyTorch: a curated list of tutorials, papers, projects, communities and more relating to PyTorch.
Nextflow config builder scripts for supported HPC infrastructures.
pandas on AWS - Easy integration with Athena, Glue, Redshift, Timestream, Neptune, OpenSearch, QuickSight, Chime, CloudWatchLogs, DynamoDB, EMR, SecretManager, PostgreSQL, MySQL, SQLServer and S3 (…