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CSV support #210

Merged
merged 23 commits into from
Jun 4, 2024
Merged

CSV support #210

merged 23 commits into from
Jun 4, 2024

Commits on May 29, 2024

  1. Add template CSV inputs

    @yashpatel6
    yashpatel6 committed May 29, 2024
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Commits on Jun 1, 2024

  1. Add CSV parser function

    @yashpatel6
    yashpatel6 committed Jun 1, 2024
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  2. Add call to CSV parsing function in setup

    @yashpatel6
    yashpatel6 committed Jun 1, 2024
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  3. Simplify CSV input to not require all columns and only columns for in… 

    …puts given
    @yashpatel6
    yashpatel6 committed Jun 1, 2024
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  4. Use updated Nextflow-config submodule to allow empty field CSV parsing

    @yashpatel6
    yashpatel6 committed Jun 1, 2024
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  5. Update CHANGELOG

    @yashpatel6
    yashpatel6 committed Jun 1, 2024
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  6. Add CSV param in template

    @yashpatel6
    yashpatel6 committed Jun 1, 2024
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  7. Add input CSV to schema

    @yashpatel6
    yashpatel6 committed Jun 1, 2024
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  8. Make BAM/CRAM YAML templates clearer

    @yashpatel6
    yashpatel6 committed Jun 1, 2024
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  9. Make FASTQ input YAML clearer

    @yashpatel6
    yashpatel6 committed Jun 1, 2024
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  10. Make mix inputs clearer

    @yashpatel6
    yashpatel6 committed Jun 1, 2024
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  11. Make SRC input YAML clearer

    @yashpatel6
    yashpatel6 committed Jun 1, 2024
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  12. Add temporary note in README

    @yashpatel6
    yashpatel6 committed Jun 1, 2024
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  13. Add example of filling in in README

    @yashpatel6
    yashpatel6 committed Jun 1, 2024
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  14. Fix YAML lint

    @yashpatel6
    yashpatel6 committed Jun 1, 2024
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  15. Fix duplicate IDs

    @yashpatel6
    yashpatel6 committed Jun 1, 2024
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Commits on Jun 3, 2024

  1. Use main branch from Nextflow-config

    @yashpatel6
    yashpatel6 committed Jun 3, 2024
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  2. Remove excessive echo statements

    @yashpatel6
    yashpatel6 committed Jun 3, 2024
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  3. Merge branch 'main' into yashpatel-csv-support

    @yashpatel6
    yashpatel6 committed Jun 3, 2024
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  4. Merge branch 'main' into yashpatel-csv-support

    @yashpatel6
    yashpatel6 committed Jun 3, 2024
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  5. Update assertion message when failed

    @yashpatel6
    yashpatel6 committed Jun 3, 2024
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Commits on Jun 4, 2024

  1. Update README.md with suggestion 

    Co-authored-by: Sorel Fitz-Gibbon <3223552+sorelfitzgibbon@users.noreply.github.com>
    @yashpatel6 @sorelfitzgibbon
    yashpatel6 and sorelfitzgibbon authored Jun 4, 2024
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  2. Update README.md with suggestion 

    Co-authored-by: Sorel Fitz-Gibbon <3223552+sorelfitzgibbon@users.noreply.github.com>
    @yashpatel6 @sorelfitzgibbon
    yashpatel6 and sorelfitzgibbon authored Jun 4, 2024
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