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Add generate-SQC-BAM #174

Merged
merged 22 commits into from
Mar 18, 2024
Merged

Add generate-SQC-BAM #174

merged 22 commits into from
Mar 18, 2024

Commits on Mar 15, 2024

  1. Add generate-SQC-BAM v1.0.0

    @yashpatel6
    yashpatel6 committed Mar 15, 2024
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Commits on Mar 16, 2024

  1. Update schema with new pipeline

    @yashpatel6
    yashpatel6 committed Mar 16, 2024
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  2. Update template with new pipeline

    @yashpatel6
    yashpatel6 committed Mar 16, 2024
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  3. Add pipeline to pipeline selector

    @yashpatel6
    yashpatel6 committed Mar 16, 2024
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  4. Add pipeline to methods

    @yashpatel6
    yashpatel6 committed Mar 16, 2024
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  5. Add YAML creation process

    @yashpatel6
    yashpatel6 committed Mar 16, 2024
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  6. Add default config

    @yashpatel6
    yashpatel6 committed Mar 16, 2024
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  7. Add runner process for pipeline

    @yashpatel6
    yashpatel6 committed Mar 16, 2024
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  8. Add workflow to integrate pipeline

    @yashpatel6
    yashpatel6 committed Mar 16, 2024
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  9. Add test for generate-SQC-BAM

    @yashpatel6
    yashpatel6 committed Mar 16, 2024
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  10. Add metrics assertion script

    @yashpatel6
    yashpatel6 committed Mar 16, 2024
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  11. Add test case for pipeline

    @yashpatel6
    yashpatel6 committed Mar 16, 2024
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  12. Update test-metapipeline-DNA

    @yashpatel6
    yashpatel6 committed Mar 16, 2024
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  13. Update test-metapipeline-DNA-fastq-input

    @yashpatel6
    yashpatel6 committed Mar 16, 2024
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  14. Update test-metapipeline-DNA-batch

    @yashpatel6
    yashpatel6 committed Mar 16, 2024
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  15. Add pipeline to main workflow

    @yashpatel6
    yashpatel6 committed Mar 16, 2024
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  16. Update CHANGELOG

    @yashpatel6
    yashpatel6 committed Mar 16, 2024
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Commits on Mar 18, 2024

  1. Fix single and non-single sample ID generation for pipeline-generate-… 

    …SQC-BAM
    @yashpatel6
    yashpatel6 committed Mar 18, 2024
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  2. Fix input CSV warning

    @yashpatel6
    yashpatel6 committed Mar 18, 2024
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  3. Fix name of pipeline 

    Co-authored-by: Sorel Fitz-Gibbon <3223552+sorelfitzgibbon@users.noreply.github.com>
    @yashpatel6 @sorelfitzgibbon
    yashpatel6 and sorelfitzgibbon authored Mar 18, 2024
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  4. Remove unneeded cat 

    Co-authored-by: Sorel Fitz-Gibbon <3223552+sorelfitzgibbon@users.noreply.github.com>
    @yashpatel6 @sorelfitzgibbon
    yashpatel6 and sorelfitzgibbon authored Mar 18, 2024
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  5. Add missing pipelines in log block

    @yashpatel6
    yashpatel6 authored Mar 18, 2024
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