Algorithm parameter for running tumor-only samples #83
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yashpatel6
forbiddenpersimmon
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Will metapipeline recognize that samples are tumor only and use appropriate algorithm for call-sSNV since not all of them support tumor only samples or is that something I need to specify in the config file? |
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Answered by
yashpatel6
Jan 24, 2023
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Yes the metapipeline will handle selecting the appropriate algorithm for call-sSNV based on the input type from the CSV/YAML and sample mode from the config. Ex. tumor only, single sample mode --> metapipeline will only run the sSNV algorithms that support that input. |
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Yes the metapipeline will handle selecting the appropriate algorithm for call-sSNV based on the input type from the CSV/YAML and sample mode from the config. Ex. tumor only, single sample mode --> metapipeline will only run the sSNV algorithms that support that input.