Feat/anvil

data/config/anvil.json

@@ -0,0 +1,216 @@
+{
+  "gaTrackingId": "UA-119127212-5",
+  "graphql": {
+    "boardCounts": [
+      {
+        "graphql": "_case_count",
+        "name": "Case",
+        "plural": "Cases"
+      },
+      {
+        "graphql": "_experiment_count",
+        "name": "Experiment",
+        "plural": "Experiments"
+      },
+      {
+        "graphql": "_aliquot_count",
+        "name": "Aliquot",
+        "plural": "Aliquots"
+      }
+    ],
+    "chartCounts": [
+      {
+        "graphql": "_case_count",
+        "name": "Case"
+      },
+      {
+        "graphql": "_experiment_count",
+        "name": "Experiment"
+      }
+    ],
+    "projectDetails": "boardCounts"
+  },
+  "components": {
+    "appName": "NHGRI Genomic Data Science Analysis, Visualization, and Informatics Lab-Space (AnVIL)",
+    "index": {
+      "introduction": {
+        "heading": "The AnVIL",
+        "text": "The AnVIL supports the management, analysis and sharing of human disease data for the research community and aims to advance basic understanding of the genetic basis of complex traits and accelerate discovery and development of therapies, diagnostic tests, and other technologies for diseases like cancer. The data commons supports cross-project analyses by harmonizing data from different projects through the collaborative development of a data dictionary, providing an API for data queries and download, and providing a cloud-based analysis workspace with rich tools and resources.",
+        "link": "/submission"
+      },
+      "buttons": [
+        {
+          "name": "Define Data Field",
+          "icon": "data-field-define",
+          "body": "The AnVIL defines the data in a general way. Please study the dictionary before you start browsing.",
+          "link": "/DD",
+          "label": "Learn more"
+        },
+        {
+          "name": "Explore Data",
+          "icon": "data-explore",
+          "body": "The Exploration Page gives you insights and a clear overview under selected factors.",
+          "link": "/explorer",
+          "label": "Explore data"
+        },
+        {
+          "name": "Access Data",
+          "icon": "data-access",
+          "body": "Use our selected tool to filter out the data you need.",
+          "link": "/query",
+          "label": "Query data"
+        },
+        {
+          "name": "Analyze Data",
+          "icon": "data-analyze",
+          "body": "Analyze your selected cases using Jupyter Notebooks in our secure cloud environment",
+          "link": "#hostname#workspace/",
+          "label": "Run analysis"
+        }
+      ]
+    },
+    "navigation": {
+      "title": "The AnVIL",
+      "items": [
+        {
+          "icon": "dictionary",
+          "link": "/DD",
+          "color": "#a2a2a2",
+          "name": "Dictionary"
+        },
+        {
+          "icon": "exploration",
+          "link": "/explorer",
+          "color": "#a2a2a2",
+          "name": "Exploration"
+        },
+        {
+          "icon": "query",
+          "link": "/query",
+          "color": "#a2a2a2",
+          "name": "Query"
+        },
+        {
+          "icon": "workspace",
+          "link": "#hostname#workspace/",
+          "color": "#a2a2a2",
+          "name": "Workspace"
+        },
+        {
+          "icon": "profile",
+          "link": "/identity",
+          "color": "#a2a2a2",
+          "name": "Profile"
+        }
+      ]
+    },
+    "login": {
+      "title": "NHGRI Genomic Data Science Analysis, Visualization, and Informatics Lab-Space (AnVIL)",
+      "subTitle": "search, compare, and download data",
+      "text": "This website supports the management, analysis and sharing of human disease data for the research community and aims to advance basic understanding of the genetic basis of complex traits and accelerate discovery and development of therapies, diagnostic tests, and other technologies for diseases like cancer.",
+      "contact": "If you have any questions about access or the registration process, please contact ",
+      "email": "support@datacommons.io"
+    }
+  },
+  "featureFlags": {
+    "explorer": true
+  },
+  "arrangerConfig": {
+    "charts": {
+      "project_id": {
+        "chartType": "count",
+        "title": "Projects"
+      },
+      "node_id": {
+        "chartType": "count",
+        "title": "Cases"
+      },
+      "gender": {
+        "chartType": "pie",
+        "title": "Gender"
+      },
+      "race": {
+        "chartType": "bar",
+        "title": "Race"
+      }
+    },
+    "filters": {
+      "tabs": [
+        {
+          "title": "Family History",
+          "fields": [
+            "diabetes",
+            "hypertension",
+            "cerebrovascular_disease",
+            "chronic_respiratory_disease",
+            "coronary_artery_disease",
+            "asthma",
+            "cabg_presence",
+            "copd",
+            "emphysema",
+            "heart_failure",
+            "myocardial_infarction",
+            "stroke",
+            "hypertension_meds"
+          ]
+        },
+        {
+          "title": "Diagnosis",
+          "fields": [
+            "diastolic_blood_pressure",
+            "systolic_blood_pressure"
+          ]
+        },
+        {
+          "title": "Case",
+          "fields": [
+            "project_id",
+            "consent_codes",
+            "race",
+            "ethnicity",
+            "gender",
+            "bmi",
+            "age_at_index"
+          ]
+        }
+      ]
+    },
+    "projectId": "search",
+    "graphqlField": "case",
+    "index": "",
+    "table": {
+      "dropdowns": {
+        "download": {
+          "title": "Download"
+        }
+      },
+      "buttons": [
+        {
+          "enabled": true,
+          "type": "data",
+          "title": "Download Clinical",
+          "leftIcon": "user",
+          "rightIcon": "download",
+          "fileName": "clinical.json",
+          "dropdownId": "download"
+        },
+        {
+          "enabled": false,
+          "type": "manifest",
+          "title": "Download Manifest",
+          "leftIcon": "datafile",
+          "rightIcon": "download",
+          "fileName": "manifest.json",
+          "dropdownId": "download"
+        },
+        {
+          "enabled": true,
+          "type": "export",
+          "title": "Export to Terra",
+          "rightIcon": "external-link",
+          "leftIcon": "planet"
+        }
+      ]
+    }
+  }
+}