Merge pull request #202 from uc-cdis/feat/healbuilder

Feat/healbuilder
uc-cdis · Nov 11, 2024 · 71699ba · 71699ba
2 parents be15542 + 7b7fee8
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diff --git a/.secrets.baseline b/.secrets.baseline
diff --git a/HEAL-notebooks/Dockerfile b/HEAL-notebooks/Dockerfile
@@ -1,9 +1,10 @@
-FROM quay.io/cdis/jupyter-superslim-r:1.0.4
+FROM quay.io/cdis/jupyter-superslim-r:2.0.0
 
 ARG NOTEBOOK_DIR
 
 COPY $NOTEBOOK_DIR/ $HOME/
 
+RUN pip3 install healdata-utils
 RUN conda config --append channels conda-forge
 RUN conda install -c plotly plotly
 

diff --git a/HEAL-notebooks/bacpac/BACPAC_Synthetic_Data_Analysis.ipynb b/HEAL-notebooks/bacpac/BACPAC_Synthetic_Data_Analysis.ipynb
diff --git a/HEAL-notebooks/bacpac/requirements.txt b/HEAL-notebooks/bacpac/requirements.txt