RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.

SigProfilerSimulator allows realistic simulations of mutational patterns and mutational signatures in cancer genomes. The tool can be used to simulate signatures of single point mutations, double p…

DiamondsDenovo is a tool to calculate enrichment of de novo variants in the genome

Lite version of FLAMINGO, High-resolution 3D chromosome structures reconstruction based on Hi-C

Create anatograms using ggplot2

Software for Rapid Analyses of Human Copy Number Data

Code repository for O'Reilly book

DSSPparser is an easy tool to parse dssp file, and can transform PDB format file to dssp format file by xssp,also support the tansfrom between the PDB id and dssp format, hssp format and sequence.

The interactive graphing library for Python ✨

Toolset for SV simulation, comparison and filtering

ENCODE whole-genome bisulfite sequencing (WGBS) pipeline

HiC uniform processing pipeline

ENCODE ATAC-seq pipeline

Hifiasm: a haplotype-resolved assembler for accurate Hifi reads

Open source code for AlphaFold 2.

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

Tandem repeat genotyping and visualization from PacBio HiFi data

A minimap2 frontend for PacBio native data formats

Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads

Copy number variant caller and depth visualization utility for PacBio HiFi reads

pbsv - PacBio structural variant (SV) calling and analysis tools

R's data.table package extends data.frame:

Documents needed to create lab meeting bingo

Using bedtools to annotate protein domains

Plot Protein: Visualization of Mutations with Conservation

Plot Protein: Visualization of Mutations