ok

.gitignore

@@ -127,3 +127,4 @@ dmypy.json
 
 # Pyre type checker
 .pyre/
+.DS_Store

Tcell_exhaustion/Anderson_GSE85947_TIM3PD1TIL.csv

@@ -0,0 +1,201 @@
+TIM3negPD1neg_TIL,TIM3negPD1pos_TIL,TIM3posPD1pos_TIL
+Zbtb10,Fancc,Havcr2
+Gm21762,Vat1l,Adgrg1
+Dtx1,1700019D03Rik,Dsc2
+Ccr9,Gpm6b,Tmem119
+Dntt,Rwdd3,Rasd2
+Blnk,1500004A13Rik,Gzmg
+Lifr,Synpo,Clec7a
+Pde2a,Fshb,Npnt
+2010309G21Rik,Farsb,Ms4a6d
+Klk1b27,Tbc1d4,Mgat3
+Mef2c,Spock2,Hmox1
+Nsg2,Xcl1,Fpr2
+Klk1,Tspan2,Pdpn
+Scarb2,Gpld1,B4galnt2
+Rnase6,Ndrg2,Entpd1
+Treml2,Cd160,Itlnb
+Ptcra,Gucy1a3,Klhl30
+Fam101b,Kif13b,Ccr1
+E430014B02Rik,Pot1a,Tgfbi
+Pmepa1,Chic1,Slc37a2
+Tnfrsf13b,3300002A11Rik,Clec4d
+Mzb1,Rasgef1b,Cdk14
+Sh3pxd2a,Hspa1a,Mmp12
+Lef1,LOC100861978,Mrc1
+Sh3bgr,Gm19937,Adam8
+Cd79b,Ptprk,Cxcl2
+Aqp9,Ccr6,Fcgr1
+Sell,Syt11,Chl1
+Cmah,Spry1,Ccl9
+Pde4b,9030407P20Rik,D430041D05Rik
+Spib,Pak6,Srxn1
+Ttc28,Plekhh1,Rgs8
+Atp1b1,BC005685,Mt1
+Abhd15,2810039B14Rik,Adgre1
+Kmo,Pign,Ccl12
+A430028G04Rik,Tktl1,Fcgr3
+Siglech,Otx1,Cd93
+Klk1b9,Wdpcp,Ccl6
+9130401L11Rik,Cenpu,Ms4a7
+Emb,Ptprj,Calca
+Gbp2,Ntrk3,Fcgr4
+Eepd1,Dio2,Arnt2
+Plxdc1,Mfrp,Serpinb3b
+Tlr7,Kcnq5,Ccl8
+Pgs1,Twsg1,Msrb3
+Akap2,Itpkc,Arg1
+Foxp1,Mns1,C5ar1
+Pik3ip1,Kif5c,Npl
+Entpd6,Pank1,Il1rn
+Thra,Rab39b,Ptgs2
+Ptk2,Ubap1,Lhfpl2
+Pag1,Cetn4,Trib3
+Shb,Bace2,Mcpt8
+Psap,Hmgb3,Igf2bp2
+Rasgrp2,Ube2s,Cmtm3
+Igtp,Ccl27a,Eps8l3
+Rgmb,Rnf43,2310031A07Rik
+Alpl,Klf4,Cxcl9
+Slamf9,Tacstd2,Clec4e
+Pld4,Slc2a10,Rhou
+Igfbp4,Gpr62,Slc11a1
+Rasa3,Ttc39b,Jup
+Igkv6-23,Dlst,LOC328066
+Bzw2,Sft2d2,Adam22
+Slpi,Itgb1,Zfand4
+Tmem108,Sgsm2,Cdkn2b
+Camsap2,Pter,Cxcl1
+Igsf23,Ercc6l2,Id2
+Ifit3,Tm4sf20,Ctnnd2
+Ctsh,Sectm1a,Clec4n
+Galnt10,Bcl2l1,LOC677008
+Fam234b,Tab2,Spats2
+Ppfia4,Atxn1,Il1r2
+Sfrp2,DXErtd242e,Ptgs1
+Ifit1bl1,Prkab2,Xpo7
+Tnfaip8l2,Homer1,Hbb-bt
+Slco3a1,Wisp1,1810011H11Rik
+St3gal6,4930520O04Rik,Ncor2
+Ak8,Atp2b2,Gatm
+Sgk3,Gm6277,Gzmc
+Aldh1b1,Palld,Msr1
+Bcl11a,Nrp1,Calcb
+Pltp,Ccr8,Clec4a3
+Havcr1,5830474E16Rik,Alox5
+LOC102642487,Tyms,Raet1e
+Cd24a,Megf11,Sdc1
+Cd209a,Rnf165,Gfra2
+Gpx1,Tiam1,Ccl7
+Gramd3,Plxdc2,Tmprss6
+Klk4,Rnf214,Rai14
+Rassf3,Lrrc20,5430435K18Rik
+Mbp,Usp40,BC022960
+Aqp3,Ebi3,Colec12
+D8Ertd82e,Scin,Nqo1
+Cnr2,Ak3,Cd14
+Ppp1r13b,Tgfb1,Glis1
+Rtn4rl1,Gm26910,Mylk
+Tbc1d8,Pold1,Pilra
+Cd7,Pnkd,Gng11
+Rgs10,Mapk8ip1,C3ar1
+Usp28,Sla,Dio2
+Itgb7,Cdk5rap2,Mt2
+Rai2,Gramd1b,Nus1
+Tgtp2,Rab11fip1,Itgb5
+Secisbp2,Mfsd3,Ltf
+Klra17,Pms1,Tff1
+S1pr1,Bmpr2,Ripply3
+Man1c1,A930012N16Rik,Depdc1a
+Gabrr2,1700016C15Rik,Utf1
+Actn2,Zfp128,Lgi2
+Cyp2j6,Cldn10,Tbc1d31
+Adgrg5,Lrfn1,Wfdc17
+Armcx6,Dzip3,Ppp1r3b
+Ldlrap1,Ubr1,Ccl2
+Pydc4,Pgpep1,Lyz1
+Acss2,Pibf1,Zfp825
+Gpr146,Slc35b4,Dab2ip
+Il17ra,6430710M23Rik,Sept11
+Cyth1,AI451250,Dab2
+Rcc2,Dcaf5,Sulf2
+Tubb2b,Glcci1,LOC100038947
+N4bp2,Idi2,Nupr1
+Whrn,Arhgef16,Ccdc53
+Cox6a2,Dcaf8,F10
+Dtx4,Klrb1b,Cep85
+Tcf4,Lactb2,Ncam1
+Tsc22d1,Prkcz,Fcgr2b
+Sh3bp4,Foxp4,Clec4a2
+Igkv8-30,BC068281,Clec4b1
+Cdh5,Cables1,Apold1
+Glce,Frzb,Filip1
+AU021895,Siglecf,Gda
+Xkrx,Prss2,Rhoc
+Pdlim1,Zkscan7,C1qc
+Upb1,Metrnl,Kcnd3
+1700025G04Rik,Tmem25,Pf4
+Cxcr5,Ptch1,Eprs
+Csf2rb2,0610011F06Rik,Dynll1
+Il4ra,Hmgn5,Mthfd2l
+Rftn1,Nkap,Ubxn11
+A630023P12Rik,Ppp2r3a,Sh2d5
+St8sia1,Rnf133,Lyz2
+Flt3,Wtip,Bcl2l15
+Sema4b,Osr2,Cep170
+Foxp3,Emc7,Slc6a9
+Sh3bp5,Gm29721,Slc52a3
+Rapgef4,Mfsd8,Lilrb4a
+Sbk1,Lpar3,Crat
+Dzip1,Slc25a27,Asns
+Chst15,Gabarapl1,Esco2
+Acp5,Fam20c,Ern1
+Drc1,Mall,Renbp
+Daxx,Jam2,C1rb
+Card6,Crabp2,Grk5
+Pou6f1,Scgb1b2,Qpctl
+Ldlrad4,Akt3,Ppp2r2c
+Sidt1,Oxnad1,B4galt6
+Aff3,4932438H23Rik,Dync1li2
+Tcf7l2,Spire1,Dna2
+Kcnj8,Filip1l,Ralb
+Gimap6,Tspan32,D430020J02Rik
+Cd209d,Smyd1,Pald1
+Camk2d,Tirap,Asb5
+2810001A02Rik,Tmem219,Anxa1
+Ski,Erc2,Ppp3ca
+Il6ra,Tmem231,Tpx2
+Ggt1,Ptpn21,Sash1
+Ifit1,Zbtb42,Gm10034
+Rnd3,Senp1,Il1b
+Ube4a,Tns1,Pbx3
+Atp1a3,Nt5e,E2f8
+Fcrla,4921509J17Rik,4933431E20Rik
+Slc25a23,Ttc39c,Xpot
+Gria3,Mrpl17,Antxr1
+Grap2,Nr3c2,Chek2
+Ifnar2,Fam199x,Plpp1
+A930005H10Rik,Tbccd1,Cxcr6
+Atp10d,Cacnb1,Rpa2
+Itprip,Cabin1,Gstm5
+Ankrd11,Ube3a,Arhgef25
+Rnf144a,Zfp553,Flywch2
+Enc1,Fgfr1op,Tcrg-V4
+Tet1,Arhgef9,Pif1
+Satb1,Ssbp2,S100a1
+Tle1,Rims3,Syngr3
+Tanc1,Stk35,Osgin1
+Fam117a,Ttf2,F13a1
+Mn1,Zswim8,Hook3
+Ndufb9,Ajuba,Fcer1g
+Itgae,Sh3rf1,Zwilch
+Pja1,Etv5,Thbd
+Pdzd4,4933407A17Rik,Anxa2
+Unc5cl,Slc35a2,Galnt3
+Ablim1,Ubxn2a,Nuf2
+Klf3,Cryzl1,Rwdd4a
+Eif4h,Tespa1,Cdca2
+Lypd6b,Hspa4l,Adal
+Smim5,4933407O12Rik,Ctsd
+Galnt11,Naprt,Dock7
+Id3,D530015H24Rik,Plin2