add T cell signatures

Tcells/README.md

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+# T cell signatures
+`Trm_signatures`: From papers by [Kumar2017](https://pubmed.ncbi.nlm.nih.gov/28930685/) and [Mackay2016](https://pubmed.ncbi.nlm.nih.gov/27102484/)
+
+`Szabo_T_cell_gene_modules`: From [Szabo2019](https://pubmed.ncbi.nlm.nih.gov/31624246/)

Tcells/Szabo_T_cell_gene_modules.txt

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+Treg	CD4 NV/CM	CD4/CD8	IFN Response	Proliferation	CD8 Cytotoxic	CD8 Cytokine
+LRRC32	CTB-133G6.1	WDR86	IFIT3	PYCR1	CCL5	CCL3
+RGS1	TMEM45B	IL7R	CMPK2	NPW	GZMK	CCL3L3
+FOXP3	AK5	TSPAN2	IFIT2	LIF	GNLY	CCL4L2
+RNF207	NOG	LRRC2	IFI44L	IL2	TRGC2	IFNG
+CTLA4	NGFRAP1	SNAI3	GBP1	SLC29A1	FGFBP2	CCL4
+P2RY14	TCEA3	CD52	LGALS9	GINS2	C1orf21	GZMB
+GNG8	VSIG1	TIMP1	GBP7	ODC1	KLRF1	XCL1
+FAS	FBLN5	YPEL4	PARP9	CENPV	FCGR3A	XCL2
+MAF	EPHX2	CALHM2	XAF1	GAL	PTGDR	CSF2
+TNFRSF4	NUAK2	S100A4	STAT1	HPDL	KLRC2	CCR1
+FRMD4B	PIK3IP1	TSC22D3	MX1	NME1	EOMES	IL10
+WNT10A	HPCAL4	EPHA4	SAMD9L	FABP5	S1PR5	HOPX
+GPC1	PASK	ZNF831	GBP4	CD3EAP	CLIC3	FASLG
+RAB11FIP1	ANKRD55	ZCCHC18	GBP5	NLN	AOAH	GZMH
+ZC3H12D	C16orf74	GLIPR1	HAPLN3	POLR3G	CADM1	BATF3
+RHEBL1	SGK223	AIM1L	OAS3	KCNK15	TRGC1	TIMD4
+ARID5A	GPR146	KLRB1	LGALS3BP	GJB6	DTHD1	FEZ1
+ZC2HC1A	PABPC3	CNPY4	DDX60	NOP16	LILRB1	HAVCR2
+MB21D2	CYSLTR1	GDPD5	SECTM1	DLL3	SAMD3	ZBTB32
+CD109	LEF1	TC2N	ETV7	CCDC86	ZNF683	SLC27A2
+ETV7	ZBTB18	AHNAK	NEXN	CDC20	KLRD1	LAG3
+CMTM6	VIPR1	PBXIP1	OAS1	METTL1	NCR1	PRF1
+MAPK11	GAL3ST4	HIST1H2BD	IRF7	ATAD3B	FAM49A	IL18RAP
+HRH1	APBA2	BCL9L	IFI6	UCK2	KLRG1	GZMA
+TMEM173	TCP11L2	EEPD1	TRAFD1	SRM	CTSW	PTMS
+IRF4	HEMGN	ADAM23	ISG15	TOMM40	CD244	PHLDA1
+DUSP5	SLC22A17	THRA	IFI35	EIF4EBP1	CMC1	ZBED2
+BATF	FHIT	KCTD7	UBE2L6	RRP9	APOBEC3H	NCS1
+PLEKHG1	SLC16A10	CTSF	IFIT5	ANKLE1	CST7	IQCG
+HMMR	ZNF563	CAMK2N1	IFI30	EBNA1BP2	CX3CR1	JAKMIP1
+PLAT	FCMR	DCP1B	EPSTI1	TMEM97	FCRL6	KLRC1
+SNX10	LDLRAP1	SEPT4	DTX3L	ORC6	TMCC3	CRTAM
+GNA15	SULT1B1	FXYD2	IRF1	MRTO4	PLA2G16	CCR5
+MAST4	ATM	CECR1	BCL2L14	BOP1	TYROBP	EGR2
+SLC41A2	SELL	DPYSL2	LPIN2	G0S2	TPRG1	TNFRSF9
+GRAMD4	GIMAP2	CCDC65	IFI44	F12	C12orf75	TNF
+SPATS2L	SESN3	CDC25B	APOL6	WDR4	PLCG2	SLC4A10
+DDIT4	CACNA1I	FAM229A	STAT2	FOSL1	PLEK	ADAM19
+SMCO4	C1orf162	RP11-111M22.2	PARP14	C17orf96	RCAN2	MSC
+IRF5	EVI2B	BCO2	TRIM22	PUS7	DKK3	METRNL
+TNFRSF18	ATG9B	HHAT	IFIH1	ECE2	ADRB2	SLAMF7
+TOX2	RASA3	TGFB3	IFITM3	GCK	FCRL3	NKG7
+SPATA24	C14orf132	ANTXR2	OAS2	PDSS1	NKG7	CXCR6
+TYMP	TXK	AQP3	FBXO6	TMEM52	PPP2R2B	CD70
+PRDM1	MFGE8	CRIP2	PARP12	SMKR1	SYNGR1	ATP8B4
+RTKN2	DBP	MYO1F	ERAP2	FKBP4	KLRC4	SDC4
+SGPP2	SERINC5	MPP7	HELZ2	MRPL12	HLA-DPB1	ELOVL6
+COL9A2	EVI2A	NMT2	JAK2	C16orf59	DAPK2	ADAP1
+SPPL2A	MMP28	UTRN	ISG20	ATAD3A	F2R	IL26
+TTC7A	ACACB	NLRP3	ALPK1	DGAT2	KIR3DL2	RDH10
+CREM	SH3YL1	BTD	SLC37A3	RPP25	B3GAT1	LTA
+P2RX7	RASGRP2	KLF2	APOL1	CENPN	CD8B	MICAL2
+ETV6	ACTN1	ZFP36L2	RALB	POLR3H	TTC16	TNIP3
+TNS4	DPEP2	SUN2	TNFSF10	MFSD2A	GALNT3	CCL20
+SOCS2	CSGALNACT1	FXYD1	TAP2	TLCD1	SCD5	ULBP2
+LRRC3	TMEM143	BEST4	SOCS1	CHEK1	PDGFD	CEBPD
+STX1A	EDAR	IGFBP6	PARP10	NOLC1	ABCB1	RCAN2
+CCDC50	ADPRM	SFXN3	USP18	IFRD2	MXRA7	ZEB2
+MYO1C	TMEM204	CEP128	PLPP1	CYP27B1	CTBP2	CD226
+S1PR2	KLF2	PLCD1	TRIM21	ANKRD13B	CD8A	SEMA4A
+PLEKHG2	ADD3	CYB561	TAF4B	CKS2	ZEB2	SLAMF1
+ACOT4	PPP1R3E	ANKMY2	BST2	DDIAS	SYTL2	SEMA7A
+IKZF4	TTC28	NBPF11	CES4A	CTPS1	CHN2	FAM3C
+TIFA	GCNT4	BAZ2B	HERC6	TTLL12	FGR	IL9
+MAP3K8	TMEM63A	IL11RA	EIF2AK2	HSPE1	TGFBR3	SPAG1
+NTRK2	IL24	ITGB7	RTP4	SH2D4A	SETBP1	PRDM1
+FAM46C	PLCL1	ACSF2	APOL2	YRDC	COLGALT2	KLRD1
+KLHL5	LETMD1	ATXN7L1	LPP	C10orf2	KIR2DL4	ST8SIA4
+IZUMO4	SLC8B1	PINK1	SP110	TRAP1	FKBP1B	IER3
+TFEB	ITGA6	PDCD4	FAM19A2	TIMM8A	ADGRG1	PLEK

Tcells/Trm_signatures.csv

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+Kumar_CD69+Trm,Kumar_CD69-Tem,Mackay_Trm,Mackay_Tcm/Tem
+CA10,STK38,INSIG1,HBA2
+ITGAE1,TTC16,DDX3X,C19orf38
+ITGAE,SELL,DHCR24,SNX10
+IL2,KLF3,PPP1R16B,HAAO
+IL10,KLF2,KLF6,POGK
+CXCR6,D4S234E,BTG2,SBK1
+CXCL13,SBK1,CXCR6,KLF2
+KCNK5,FAM65B,FOSB,BCL9L
+RGS1,TTYH2,JUN,THAP7
+CRTAM,NPDC1,HSPA5,ASRGL1
+DUSP6,KRT72,NEDD4,ELMO1
+PDCD1,S1PR1,PLK3,HEXB
+IL23R,SOX13,STARD4,RACGAP1
+,KRT73,TNFAIP3,CXCR4
+,TSPAN18,B4GALNT4,CDC25B
+,PTGDS,IRF4,LFNG
+,RAP1GAP2,CISH,S1PR5
+,CX3CR1,MAPKAPK3,ARHGAP26
+,,SIK1,MPND
+,,PYGL,KCNAB2
+,,CTNNA1,ATP1B3
+,,ODC1,S1PR4
+,,PER1,TMEM71
+,,DUSP1,KBTBD11
+,,ATF3,EMB
+,,LDLRAD4,MS4A4A
+,,JUNB,GRAMD4
+,,NFKBID,EHD3
+,,FOSL2,KCNN4
+,,RGS2,TCF7
+,,NR4A2,MS4A4A
+,,DGAT1,PAQR7
+,,ARRDC3,FAM89B
+,,FRMD4B,LYST
+,,NR4A1,GLIPR2
+,,GPR171,EML3
+,,SMIM3,S1PR1
+,,EYA2,PIK3R5
+,,GPR55,SETX
+,,AL662899.4,TXNDC5
+,,CSRNP1,NCLN
+,,TRAF4,STK38
+,,ZFP36,ITGA4
+,,GLRX,CCL5
+,,DUSP5,CD84
+,,LITAF,KLF3
+,,GADD45B,ABTB2
+,,IFNG,TBXA2R
+,,OSGIN1,LYRM2
+,,ABI3,OBP2B
+,,EGR1,ACP5
+,,HILPDA,PODNL1
+,,SKIL,LEF1
+,,RNF149,SH2D1A
+,,HMGCS1,PHF11
+,,P4HB,TSR3
+,,PNRC1,GMFG
+,,GPR34,EOMES
+,,PPP1R15A,GNPDA2
+,,ITGAE,PDE2A
+,,P2RY10,SIDT1
+,,EHD1,GAB3
+,,DUSP6,TXK
+,,XCL2,AVEN
+,,SPSB1,ICAM2
+,,ISG20,KLHL6
+,,INPP4B,SAMHD1
+,,NEURL3,SMPDL3B
+,,HPGDS,TTC7B
+,,RHOB,C5orf30
+,,VDAC1,ATP10D
+,,LAD1,ST3GAL1
+,,FOS,VOPP1
+,,CDH1,PCED1B
+,,CD69,DOCK2
+,,QPCT,ITGB1
+,,HSPD1,FAM117A
+,,,IL10RA
+,,,LPIN1
+,,,RBM43
+,,,ARHGEF18
+,,,RASA3
+,,,ABHD8
+,,,FAM49A
+,,,RASGRP2
+,,,B3GAT3
+,,,PRKCQ
+,,,XRN2