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Commits on Oct 13, 2019

• Don't use -alrt in iqtree.sh

  tseemann

  committed
  ce2178f

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Commits on Oct 7, 2019

• Issue #168 | add -fconst to IQTREE; correct branch lens

  tseemann

  committed
  a0f64b6

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Commits on Oct 23, 2018

• Anders instructions for a raxml.sh module

  tseemann

  committed
  e53efc2

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• Add --noTRNA to prokka_fast

  tseemann

  committed
  45fd202

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Commits on Oct 19, 2018

• Rapid non-PE 1-kmer version of SKESA

  tseemann

  committed
  7ed4314

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Commits on Oct 10, 2018

• Update for SKESA 2.3 command line change

  tseemann

  committed
  b9b2d41

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Commits on Oct 6, 2018

• remove dipspades plugin

  tseemann

  committed
  e78f08d

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Commits on Sep 4, 2018

• Add dipspades plugin for fungal genomes

  tseemann

  committed
  d8e96b1

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Commits on Sep 3, 2018

• Mixed up --output and --report in kraken2

  tseemann

  committed
  a604799

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• Add -nt AUTO to -ntmax CPUS

  tseemann

  committed
  632aa73

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Commits on Aug 19, 2018

• Issue #186 | handle non-gz files for skesa

  tseemann

  committed
  b72cd7c

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Commits on Jul 31, 2018

• Forgot to add kraken2.sh plugin

  tseemann

  committed
  36b66be

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• Issue #169 | make prokka a plugin

  tseemann

  committed
  8e5d324

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• Issue #165 | use bash not sh for plugins

  tseemann

  committed
  2d3f29d

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Commits on Jul 28, 2018

• iqtree -fast can't do bootstraps

  tseemann

  committed
  2137875

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Commits on Jul 6, 2018

• Issue #174 | add bootstrap labels to iqtree

  tseemann

  committed
  b15e4cc

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Commits on Jun 26, 2018

• Add two more iqtree flavours to plugins

  tseemann

  committed
  6555032

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Commits on Jun 25, 2018

• Add --taxoner and support Kraken or Centrifuge

  tseemann

  committed
  d257d7c

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Commits on Jun 10, 2018

• Add --prefill and --treebuilder options to v2

  tseemann

  committed
  77e0678

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Commits on Feb 26, 2018

• add plugin for NCBI skesa assembler

  tseemann

  committed
  1395eaf

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Commits on Sep 27, 2017

• Give shovill 16GB RAM default instead

  tseemann

  committed
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Commits on Sep 24, 2017

• Issue #68 | Assemblers now plug-in

  tseemann

  committed
  a76d74c

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• Commence support for 'plugins'

  tseemann

  committed
  455998f

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