Update of pre-installed db, fix abricate-getdb script, and transition CI to github actions #217
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Create new CI yaml Update to latest Perl5 release and BLAST version
fmaguire
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Quick update of database, fix of broken or outdated URLs in abricate-getdb script, and fix of the CI
Documentation updated accordingly and tests run successfully.
Update databases in repository
Updates default pre-installed repository databases:
ncbi, victors, argannot, card, resfinder, plasmidfinder, megares, vfdbupdates to latest versionsecoh, bacmet2, ecoli_vfrefreshed (although underlying database not changed as far as I can tell)abricate-getdbfixesCI Transition
Existing travis CI didn't seem to be alive anymore so transitioned the same CI so just use github actions.
Updated the CI to use the latest perl5 version 5.40 and the latest BLAST+ version 2.16.0
Should resolve #152 #200 #203 #204